Parental gene:

VIM, ENSDNOG00000011305

Aliases:None
Description:vimentin [Source:HGNC Symbol;Acc:12692]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_17048:25774..29274(-)


>ENSDNOG00000011305
GACGTGGACAATGCTTCTCTGGCGCGTCTCGACCTTGAGCGGAAGGTGGAGTCCTTGCAGGAGGAGATTGCCTTTTTGAA
GAAACTGCATGAAGAGGAAATCCAGGAGCTGCAGGCGCAGATCCAGGAGCAGCATGTCCAGATCGACATGGACGTTTCCA
AGCCCGACCTCACGGCTGCGCTGCGCGACGTGCGCCAGCAGTACGAGAGCGTGGCTGCCAAGAACCTGCAGGAGGCCGAG
GAGTGGTACAAGTCCAAGTTTGCTGACCTGTCCGAGGCTGCCAACAGGAACAACGACGCACTGCGCCAGGCCAAGCAGGA
GTCCAACGAGTACCGGCGGCAGGTGCAGTCCCTCACCTGTGAGGTGGACGCGCTCAAAGGCACCAACGAGTCTCTGGAGC
GCCAGATGCGTGAAATGGAAGAGAATTTTGCCGTGGAAGCTGCTAACTACCAAGACACTATCGGCCGCCTGCAGGACGAG
ATTCAGAACATGCTCCGCGAATACCAGGACCTGCTGAACGTCAAGATGGCGCTGGACATCGAGATCGCCACCTACAGGAA
GCTGCTGGAGGGCGAGGAGAGCAGGATTTCTCTGCCTCTTCCAAACTTTGCTTCCCTGAACCTGAGGGAAACCAACCTGG
AGTCGCTGCCTCTCGTCGACACCCACTCCAAAAGGACACTCCTGATTAAGACGGTGGAAACTCGAGACGGGCAGGTTATC
AACGAAACTTCCCAACATCACGATGACCTTGAGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 180 .47 RPM
SRP012922_cerebellum 30 .66 RPM
SRP012922_heart 130 .17 RPM
SRP012922_kidney 120 .20 RPM
SRP012922_liver 31 .89 RPM
SRP012922_lung 897 .41 RPM
SRP012922_quadricep_muscle 195 .93 RPM
SRP012922_spleen 903 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000004529 ortholog_one2one 2 retrogenes
retro_cfam_1902, retro_cfam_2022,
Callithrix jacchus ENSCJAG00000008688 ortholog_one2one 2 retrogenes
retro_cjac_1026, retro_cjac_1456,
Tarsius syrichta ENSTSYG00000004937 ortholog_one2one 2 retrogenes
retro_tsyr_1756, retro_tsyr_564,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_72 50.30 66.53
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSDNOG00000011305 retrocopies