Parental gene: | VIM, ENSCJAG00000008688 |
| Aliases: | LOC100408168, VIM, vimentin |
| Description: | vimentin [Source:HGNC Symbol;Acc:12692] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:15003283..15012889(+) |
>ENSCJAG00000008688
CGCTCCCACCACCCACACCCACCGCGCCCGTCCGTGTCTTCGTCCTCCTACCGCAGGATGTTCGGCGGCCCGGGCACCGC
GAGCCGGCCGAGCTCCAGCCGGAGCTACGTGACCACGTCCACCCGCACCTACAGCCTGGGCAGCGCGCTGCGCCCCAGCA
CCAGCCGCAGCCTCTACGCCTCGTCTCCGGGCGGCGTGTATGCCACGCGCTCCTCGGCAGTGCGCCTGCGGAGCAGCGTT
CCCGGGGTGCGACTGCTGCAGGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACCGAGTTCAAGAACACCCGCAC
CAACGAGAAGGTGGAGCTGCAGGAGCTGAATGACCGCTTCGCAAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGA
ATAAGATCCTGCTGGCCGAGCTCGAGCAGCTTAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATG
CGGGAGCTGCGCCGACAGGTGGACCAGCTCACCAACGACAAAGCCCGAGTCGAGGTGGAGCGCGACAACCTGGCCGAAGA
CATCATGCGCCTCCGGGAAAAATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAGAGCACCCTGCAATCTTTCAGAC
AGGATGTTGACAATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTTTG
AAGAAAATACACGAAGAGGAAATCCAGGAGCTGCAGGCTCAGATTCAGGAACAGCATGTCCAGATCGATGTGGACGTTTC
CAAGCCGGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAGTATGAAAGTGTGGCTGCCAAGAACCTGCAGGAGGCAG
AAGAATGGTACAAGTCTAAGTTTGCTGACCTCTCCGAGGCTGCCAACCGAAACAATGATGCCCTACGCCAGGCAAAGCAG
GAGTCCAATGAGTACCGGAGACAGGTGCAGTCCCTCACCTGTGAAGTGGATGCTCTTAAAGGAACCAACGAGTCCCTGGA
ACGCCAGATGCGTGAAATGGAAGAGAACTTTGCCGTCGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATG
AGATTCAGAACATGAAGGAGGAAATGGCTCGTCACCTTCGTGAATACCAAGACCTGCTCAATGTTAAGATGGCCCTTGAC
ATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCT
GAACCTGAGGGAAACTAATCTGGATTCACTCCCTCTGGTTGACACACACTCAAAAAGGACACTTCTGATTAAGACGGTTG
AAACTAGAGATGGACAGGTTGTCAATGAATCCGCATCTCAGATACAGCTAGCTAATTTGAGAGGTTCGGGTTTCACTCAT
GCCTACTAA
CGCTCCCACCACCCACACCCACCGCGCCCGTCCGTGTCTTCGTCCTCCTACCGCAGGATGTTCGGCGGCCCGGGCACCGC
GAGCCGGCCGAGCTCCAGCCGGAGCTACGTGACCACGTCCACCCGCACCTACAGCCTGGGCAGCGCGCTGCGCCCCAGCA
CCAGCCGCAGCCTCTACGCCTCGTCTCCGGGCGGCGTGTATGCCACGCGCTCCTCGGCAGTGCGCCTGCGGAGCAGCGTT
CCCGGGGTGCGACTGCTGCAGGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACCGAGTTCAAGAACACCCGCAC
CAACGAGAAGGTGGAGCTGCAGGAGCTGAATGACCGCTTCGCAAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGA
ATAAGATCCTGCTGGCCGAGCTCGAGCAGCTTAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGAGATG
CGGGAGCTGCGCCGACAGGTGGACCAGCTCACCAACGACAAAGCCCGAGTCGAGGTGGAGCGCGACAACCTGGCCGAAGA
CATCATGCGCCTCCGGGAAAAATTGCAGGAGGAGATGCTTCAGAGAGAGGAAGCCGAGAGCACCCTGCAATCTTTCAGAC
AGGATGTTGACAATGCGTCTCTGGCACGTCTTGACCTTGAACGCAAAGTGGAATCCTTGCAAGAAGAGATTGCCTTTTTG
AAGAAAATACACGAAGAGGAAATCCAGGAGCTGCAGGCTCAGATTCAGGAACAGCATGTCCAGATCGATGTGGACGTTTC
CAAGCCGGACCTCACGGCTGCCCTGCGTGACGTACGTCAGCAGTATGAAAGTGTGGCTGCCAAGAACCTGCAGGAGGCAG
AAGAATGGTACAAGTCTAAGTTTGCTGACCTCTCCGAGGCTGCCAACCGAAACAATGATGCCCTACGCCAGGCAAAGCAG
GAGTCCAATGAGTACCGGAGACAGGTGCAGTCCCTCACCTGTGAAGTGGATGCTCTTAAAGGAACCAACGAGTCCCTGGA
ACGCCAGATGCGTGAAATGGAAGAGAACTTTGCCGTCGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATG
AGATTCAGAACATGAAGGAGGAAATGGCTCGTCACCTTCGTGAATACCAAGACCTGCTCAATGTTAAGATGGCCCTTGAC
ATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGGATTTCTCTGCCTCTTCCAAACTTTTCCTCCCT
GAACCTGAGGGAAACTAATCTGGATTCACTCCCTCTGGTTGACACACACTCAAAAAGGACACTTCTGATTAAGACGGTTG
AAACTAGAGATGGACAGGTTGTCAATGAATCCGCATCTCAGATACAGCTAGCTAATTTGAGAGGTTCGGGTTTCACTCAT
GCCTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 110 .21 RPM |
| SRP051959_skeletal_muscle | 66 .47 RPM |
| SRP051959_lymph_node | 145 .22 RPM |
| SRP051959_lung | 193 .79 RPM |
| SRP051959_liver | 7 .82 RPM |
| SRP051959_kidney | 80 .47 RPM |
| SRP051959_heart | 195 .54 RPM |
| SRP051959_colon | 65 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018178 | other_paralog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000011305 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004937 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1026 | 91.86 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1456 | 91.00 | 66.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008688 retrocopies