Parental gene:

TPD52, ENSDNOG00000017379

Aliases:None
Description:tumor protein D52 [Source:HGNC Symbol;Acc:12005]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_660:400..72411(-)


>ENSDNOG00000017379
AGGGATTATAGAGAAATGGATTCATATGAGGACTACAAGTCACCATTTGATTTTGACAAAGGAGTGAACAAAAACTATCT
CTACTTATCTCCCAGTGGAAATTCATCTCCACCTGGATCGCCTACTCTTCAGAAACATGGTCTGCTGAGAACAGACTCAG
TACCGGAGGAAGGAGAAGATGTTGCTGCTGCTATCAGTGCCACGGAGGCCTTGTCGGAGGAGGAGCAAGAAGAGCTAAGA
AGAGAACTTGCAAAGGTAGAAGAGGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAAAGAGAAACATCTAGCAGAAAT
TAAGCGAAAACTTGGAATCAACTCACTACAGGAACTAAAGCAGAACATTGCCAAAGGGTGGCAAGATGTGACAGCAACGT
CTGCATACAAGAAGACATCTGAAACCTTGTCTCAGGCTGGACAGAAGGCTTCAGCTGCTTTTTCATCTGTTGGATCAGTC
ATCACCAAAAAGCTGGAAGATGTAAAAAACTCTCCGACATTCAAATCATTTGAAGAAAAGGTTGAAAACTTAAAGTCTAA
AGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTGGAGAAGTCTTGAATTCAACTGCAAATGCTAGTGCCACGGCCACGG
AGCCTCTCACAGAGCAGACACAGGAGAGCCTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 171 .52 RPM
SRP012922_cerebellum 55 .40 RPM
SRP012922_heart 2 .55 RPM
SRP012922_kidney 141 .83 RPM
SRP012922_liver 14 .09 RPM
SRP012922_lung 8 .55 RPM
SRP012922_quadricep_muscle 1 .38 RPM
SRP012922_spleen 19 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000014930 within_species_paralog 1 retrogene
retro_dnov_1582,
Mus musculus ENSMUSG00000027506 ortholog_one2one 1 retrogene
retro_mmus_3221,
Oryctolagus cuniculus ENSOCUG00000008247 ortholog_one2one 1 retrogene
retro_ocun_325,
Otolemur garnettii ENSOGAG00000016601 ortholog_one2one 2 retrogenes
retro_ogar_1677, retro_ogar_348,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1294 72.00 54.91
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2. retro_dnov_1451 64.10 51.79
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Download FASTA sequences of all ENSDNOG00000017379 retrocopies