Parental gene:

ENSEEUG00000008947

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_6663:55687..57825(-)


>ENSEEUG00000008947
ACAGTTTCGCGGAGAGTCGCCGCGGTTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCCCCCACCCCGACC
GGCCACCCCGAACCAGCCGTCCACCACTTCGTCACAGCGCCCACCGATCGGCTCCAGGCCTTCGCCGTCCCCGCGCCGCG
CCATGACGACCGCGTCCCCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCCGCCATCAACCGCCAGATCAAC
CTGGAGCTCTACGCCTCCTACGTCTACCTGTCGATGTCTTACTACTTTGACCGAGACGACGTGGCGCTGAAGAACTTTGC
CAAGTACTTCCTTCACCAGTCCCACGAGGAGAGGGAGCACGCGGAGAAACTGATGAAGCTACAGAACCAGCGCGGCGGCC
GCATCTACCTGCAGGACATCAAGAAACCGGAACGTGATGACTGGGAGAACGGGCTGAACGCCATGGAGTGCGCGTTACAC
TTGGAAAAGACTGTCAATCAGTCACTACTGGAACTGCACAAACTGGCCACTGAGAAAAATGACCCCCACCTGTGTGATTT
CCTCGAGACCCATTACCTGGACGAGCAGGTAAAATCCATCAAGGAGCTGGGTGACCACGTGACCAACCTGCGGAGGATGG
GCGCCCCCCAGTCTGGCCTGGCGGAGTATCTCTTCGACAAGCACACCTTGGGAGACAGTGACGAGAGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 746 .42 RPM
SRP017611_kidney 1248 .45 RPM
SRP017611_liver 1637 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Latimeria chalumnae ENSLACG00000017426 ortholog_one2many 1 retrogene
retro_lcha_75,
Tursiops truncatus ENSTTRG00000010405 ortholog_one2one 18 retrogenes
retro_ttru_1059, retro_ttru_1107, retro_ttru_112, retro_ttru_121, retro_ttru_1395, retro_ttru_1484, retro_ttru_152, retro_ttru_1568, retro_ttru_1680, retro_ttru_1760, retro_ttru_1765, retro_ttru_1829, retro_ttru_1881, retro_ttru_248, retro_ttru_517, retro_ttru_58, retro_ttru_834, retro_ttru_97,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_236 50.39 54.66
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2. retro_eeur_268 78.42 79.24
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3. retro_eeur_313 53.76 73.31
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4. retro_eeur_348 57.02 50.85
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5. retro_eeur_376 72.09 53.39
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6. retro_eeur_384 58.02 68.64
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7. retro_eeur_391 75.00 81.36
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8. retro_eeur_483 58.87 59.75
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Download FASTA sequences of all ENSEEUG00000008947 retrocopies