Common name: Coelacanth
Latin name: Latimeria chalumnae
Genome assembly: LatCha1
All retrocopies: 119
Parental genes: 89

Summary: Number of retrocopies :
Conserved ORF: 52 ORF 67 ORF
Expressed retrocopies (RNA-Seq): 22 RNA-Seq 97 RNA-Seq

# RetrogeneDB ID Identity Coverage ORF conservation Expression evidence
1. retro_lcha_1 98.05 % 100.00 % ORF RNA-Seq
2. retro_lcha_2 100.00 % 100.00 % ORF RNA-Seq
3. retro_lcha_3 87.69 % 100.00 % ORF RNA-Seq
4. retro_lcha_4 76.21 % 86.15 % ORF RNA-Seq
5. retro_lcha_5 98.62 % 100.00 % ORF RNA-Seq
6. retro_lcha_6 82.29 % 100.00 % ORF RNA-Seq
7. retro_lcha_7 99.11 % 100.00 % ORF RNA-Seq
8. retro_lcha_8 94.48 % 100.00 % ORF RNA-Seq
9. retro_lcha_9 99.49 % 90.32 % ORF RNA-Seq
10. retro_lcha_10 56.35 % 98.34 % ORF RNA-Seq
11. retro_lcha_11 99.22 % 55.41 % ORF RNA-Seq
12. retro_lcha_12 77.46 % 87.12 % ORF RNA-Seq
13. retro_lcha_13 50.40 % 80.30 % ORF RNA-Seq
14. retro_lcha_14 59.17 % 79.53 % ORF RNA-Seq
15. retro_lcha_15 87.43 % 98.96 % ORF RNA-Seq
16. retro_lcha_16 99.29 % 99.29 % ORF RNA-Seq
17. retro_lcha_17 64.31 % 84.75 % ORF RNA-Seq
18. retro_lcha_18 79.49 % 100.00 % ORF RNA-Seq
19. retro_lcha_19 98.41 % 100.00 % ORF RNA-Seq
20. retro_lcha_20 51.28 % 94.79 % ORF RNA-Seq
21. retro_lcha_21 81.36 % 50.86 % ORF RNA-Seq
22. retro_lcha_22 85.54 % 50.30 % ORF RNA-Seq
23. retro_lcha_23 99.33 % 100.00 % ORF RNA-Seq
24. retro_lcha_24 71.64 % 70.53 % ORF RNA-Seq
25. retro_lcha_25 92.59 % 87.10 % ORF RNA-Seq
26. retro_lcha_26 72.73 % 91.48 % ORF RNA-Seq
27. retro_lcha_27 68.62 % 59.62 % ORF RNA-Seq
28. retro_lcha_28 69.23 % 55.71 % ORF RNA-Seq
29. retro_lcha_29 67.14 % 99.29 % ORF RNA-Seq
30. retro_lcha_31 79.04 % 100.00 % ORF RNA-Seq
31. retro_lcha_32 90.74 % 100.00 % ORF RNA-Seq
32. retro_lcha_33 73.33 % 87.84 % ORF RNA-Seq
33. retro_lcha_34 61.26 % 64.53 % ORF RNA-Seq
34. retro_lcha_35 50.45 % 80.17 % ORF RNA-Seq
35. retro_lcha_36 72.31 % 87.84 % ORF RNA-Seq
36. retro_lcha_37 74.44 % 66.42 % ORF RNA-Seq
37. retro_lcha_38 60.63 % 65.76 % ORF RNA-Seq
38. retro_lcha_39 83.03 % 82.15 % ORF RNA-Seq
39. retro_lcha_41 64.43 % 87.39 % ORF RNA-Seq
40. retro_lcha_42 66.09 % 60.32 % ORF RNA-Seq
41. retro_lcha_44 53.33 % 87.84 % ORF RNA-Seq
42. retro_lcha_45 79.45 % 52.99 % ORF RNA-Seq
43. retro_lcha_47 92.38 % 100.00 % ORF RNA-Seq
44. retro_lcha_48 69.23 % 80.21 % ORF RNA-Seq
45. retro_lcha_49 56.48 % 61.85 % ORF RNA-Seq
46. retro_lcha_50 66.09 % 91.94 % ORF RNA-Seq
47. retro_lcha_51 97.40 % 100.00 % ORF RNA-Seq
48. retro_lcha_52 82.22 % 74.59 % ORF RNA-Seq
49. retro_lcha_53 78.64 % 69.13 % ORF RNA-Seq
50. retro_lcha_55 83.02 % 99.06 % ORF RNA-Seq
51. retro_lcha_56 60.16 % 75.90 % ORF RNA-Seq
52. retro_lcha_57 74.74 % 70.15 % ORF RNA-Seq
53. retro_lcha_58 79.31 % 53.60 % ORF RNA-Seq
54. retro_lcha_59 85.63 % 74.77 % ORF RNA-Seq
55. retro_lcha_60 57.07 % 92.34 % ORF RNA-Seq
56. retro_lcha_61 81.67 % 89.85 % ORF RNA-Seq
57. retro_lcha_62 67.41 % 68.30 % ORF RNA-Seq
58. retro_lcha_63 81.96 % 84.35 % ORF RNA-Seq
59. retro_lcha_64 63.37 % 100.00 % ORF RNA-Seq
60. retro_lcha_65 67.61 % 85.37 % ORF RNA-Seq
61. retro_lcha_66 74.18 % 81.53 % ORF RNA-Seq
62. retro_lcha_67 100.00 % 100.00 % ORF RNA-Seq
63. retro_lcha_68 87.93 % 99.57 % ORF RNA-Seq
64. retro_lcha_69 53.85 % 78.95 % ORF RNA-Seq
65. retro_lcha_70 61.46 % 92.34 % ORF RNA-Seq
66. retro_lcha_71 64.04 % 95.65 % ORF RNA-Seq
67. retro_lcha_72 60.50 % 94.35 % ORF RNA-Seq
68. retro_lcha_73 96.47 % 72.65 % ORF RNA-Seq
69. retro_lcha_74 86.67 % 69.08 % ORF RNA-Seq
70. retro_lcha_75 64.22 % 60.45 % ORF RNA-Seq
71. retro_lcha_76 74.63 % 57.51 % ORF RNA-Seq
72. retro_lcha_77 74.63 % 57.51 % ORF RNA-Seq
73. retro_lcha_78 66.67 % 55.70 % ORF RNA-Seq
74. retro_lcha_79 69.19 % 82.88 % ORF RNA-Seq
75. retro_lcha_80 64.62 % 87.84 % ORF RNA-Seq
76. retro_lcha_81 51.85 % 51.46 % ORF RNA-Seq
77. retro_lcha_82 96.02 % 51.60 % ORF RNA-Seq
78. retro_lcha_83 81.14 % 93.12 % ORF RNA-Seq
79. retro_lcha_84 68.41 % 93.33 % ORF RNA-Seq
80. retro_lcha_85 96.86 % 79.94 % ORF RNA-Seq
81. retro_lcha_86 98.97 % 51.60 % ORF RNA-Seq
82. retro_lcha_87 76.70 % 62.42 % ORF RNA-Seq
83. retro_lcha_88 70.00 % 52.53 % ORF RNA-Seq
84. retro_lcha_89 79.63 % 80.60 % ORF RNA-Seq
85. retro_lcha_90 91.97 % 79.19 % ORF RNA-Seq
86. retro_lcha_92 59.26 % 64.24 % ORF RNA-Seq
87. retro_lcha_93 77.95 % 87.84 % ORF RNA-Seq
88. retro_lcha_94 68.18 % 83.21 % ORF RNA-Seq
89. retro_lcha_95 68.89 % 70.31 % ORF RNA-Seq
90. retro_lcha_96 55.77 % 72.22 % ORF RNA-Seq
91. retro_lcha_97 74.35 % 94.06 % ORF RNA-Seq
92. retro_lcha_98 50.68 % 61.88 % ORF RNA-Seq
93. retro_lcha_99 80.00 % 87.84 % ORF RNA-Seq
94. retro_lcha_100 70.89 % 90.80 % ORF RNA-Seq
95. retro_lcha_101 61.06 % 89.52 % ORF RNA-Seq
96. retro_lcha_102 82.99 % 87.39 % ORF RNA-Seq
97. retro_lcha_103 95.05 % 61.35 % ORF RNA-Seq
98. retro_lcha_104 87.97 % 97.06 % ORF RNA-Seq
99. retro_lcha_105 56.85 % 61.88 % ORF RNA-Seq
100. retro_lcha_106 79.49 % 87.84 % ORF RNA-Seq
101. retro_lcha_107 60.51 % 59.47 % ORF RNA-Seq
102. retro_lcha_108 70.61 % 96.37 % ORF RNA-Seq
103. retro_lcha_109 77.55 % 87.84 % ORF RNA-Seq
104. retro_lcha_112 90.43 % 51.11 % ORF RNA-Seq
105. retro_lcha_113 55.05 % 87.84 % ORF RNA-Seq
106. retro_lcha_114 57.79 % 87.84 % ORF RNA-Seq
107. retro_lcha_115 59.03 % 62.61 % ORF RNA-Seq
108. retro_lcha_116 54.11 % 61.88 % ORF RNA-Seq
109. retro_lcha_117 50.22 % 99.11 % ORF RNA-Seq
110. retro_lcha_118 57.02 % 89.52 % ORF RNA-Seq
111. retro_lcha_120 80.43 % 65.14 % ORF RNA-Seq
112. retro_lcha_121 56.76 % 71.43 % ORF RNA-Seq
113. retro_lcha_122 55.33 % 52.26 % ORF RNA-Seq
114. retro_lcha_123 84.62 % 100.00 % ORF RNA-Seq
115. retro_lcha_124 63.33 % 69.88 % ORF RNA-Seq
116. retro_lcha_125 51.92 % 65.92 % ORF RNA-Seq
117. retro_lcha_126 72.87 % 85.56 % ORF RNA-Seq
118. retro_lcha_127 83.33 % 82.05 % ORF RNA-Seq
119. retro_lcha_128 93.48 % 57.74 % ORF RNA-Seq
# Ensembl ID Symbol Description
1. ENSLACG00000017346 MAD1L1
2. ENSLACG00000013075
3. ENSLACG00000017531 RPS25
4. ENSLACG00000015373 RPL12
5. ENSLACG00000008511
6. ENSLACG00000007599 rpl26 (3 of 3) ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
7. ENSLACG00000003023
8. ENSLACG00000003157
9. ENSLACG00000004306 TPT1
10. ENSLACG00000016144 vbp1 (1 of 2) von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
11. ENSLACG00000002210 mibp2 (2 of 2) muscle-specific beta 1 integrin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031113-14]
12. ENSLACG00000016599 SKP1
13. ENSLACG00000011376 LHCGR
14. ENSLACG00000002456 SNRPF
15. ENSLACG00000002800 RPE Ribulose-phosphate 3-epimerase [Source:UniProtKB/TrEMBL;Acc:H3A0F4]
16. ENSLACG00000014002 OCIAD1
17. ENSLACG00000011798 aldh2.2 aldehyde dehydrogenase 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030326-5]
18. ENSLACG00000013603 RPL31
19. ENSLACG00000009006 MRPS25
20. ENSLACG00000007183 PTP4A1
21. ENSLACG00000004430 rpl23 (1 of 2) ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. ENSLACG00000012678 RPL21
23. ENSLACG00000017219 RPS10
24. ENSLACG00000004625 NDUFS6
25. ENSLACG00000017174 rps13 (1 of 3) ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
26. ENSLACG00000018011 CFL2
27. ENSLACG00000016164
28. ENSLACG00000013736 SOD1 Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:H3B131]
29. ENSLACG00000011124
30. ENSLACG00000000589
31. ENSLACG00000008969 PTMS
32. ENSLACG00000003571 RPL7
33. ENSLACG00000016430 BDH1
34. ENSLACG00000005796 NDUFA2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Source:UniProtKB/TrEMBL;Acc:H3AA68]
35. ENSLACG00000015565 eif1axb eukaryotic translation initiation factor 1A, X-linked, b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
36. ENSLACG00000017943 plin2 (7 of 7) perilipin 2 [Source:ZFIN;Acc:ZDB-GENE-050913-12]
37. ENSLACG00000016958
38. ENSLACG00000019009
39. ENSLACG00000014700 EEF1G eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213]
40. ENSLACG00000012581 TMEM14A
41. ENSLACG00000007365 IDH3G
42. ENSLACG00000002787 rpl37 (2 of 2) ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
43. ENSLACG00000010847 CXORF57
44. ENSLACG00000022519 HSBP1 heat shock factor binding protein 1 [Source:HGNC Symbol;Acc:5203]
45. ENSLACG00000001771 RHBG
46. ENSLACG00000012753 rps21 (1 of 2) ribosomal protein S21 [Source:ZFIN;Acc:ZDB-GENE-040426-1102]
47. ENSLACG00000002835 PPDPF
48. ENSLACG00000000210 SRI
49. ENSLACG00000018879
50. ENSLACG00000009814
51. ENSLACG00000002952 eef1a1b eukaryotic translation elongation factor 1 alpha 1b [Source:ZFIN;Acc:ZDB-GENE-050417-327]
52. ENSLACG00000000522
53. ENSLACG00000016941 RHOA
54. ENSLACG00000012630 rplp1 (1 of 2) ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. ENSLACG00000002156
56. ENSLACG00000012745
57. ENSLACG00000015861 LSM4
58. ENSLACG00000007580
59. ENSLACG00000015430 MOB4
60. ENSLACG00000011730 PLSCR3
61. ENSLACG00000006603 CHIC2
62. ENSLACG00000007024 SLC25A3
63. ENSLACG00000017963 CAPZA1
64. ENSLACG00000000639
65. ENSLACG00000018758 MAK16
66. ENSLACG00000010217
67. ENSLACG00000010215 FUNDC1
68. ENSLACG00000004471 MYL5
69. ENSLACG00000000234
70. ENSLACG00000012094 PHF5A
71. ENSLACG00000022222 PLAUR plasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:9053]
72. ENSLACG00000007334 SLC5A2
73. ENSLACG00000008835 RPL17
74. ENSLACG00000011801 ACTC1
75. ENSLACG00000005059 CALM3
76. ENSLACG00000004465 UQCRB
77. ENSLACG00000014539
78. ENSLACG00000015194 psmb5 (1 of 2) proteasome (prosome, macropain) subunit, beta type, 5 [Source:ZFIN;Acc:ZDB-GENE-990415-215]
79. ENSLACG00000013152 NDUFB10
80. ENSLACG00000009340 ATP5B ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:H3ALT2]
81. ENSLACG00000004118 H3F3C Histone H3 [Source:UniProtKB/TrEMBL;Acc:H3A4Q6]
82. ENSLACG00000015161 RPL36 60S ribosomal protein L36 [Source:UniProtKB/TrEMBL;Acc:H3B5P1]
83. ENSLACG00000012468
84. ENSLACG00000011476 RPS15A
85. ENSLACG00000011578 RPL37A
86. ENSLACG00000017426 fth1a ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
87. ENSLACG00000007042
88. ENSLACG00000015639 RPL14
89. ENSLACG00000008132
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)