Parental gene:

PDLIM1, ENSG00000107438

Aliases:PDLIM1, CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1
Description:PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067]
Organism:Human (Homo sapiens)
Coordinates:10:96997328..97050781(-)


>ENSG00000107438
ATGACCACCCAGCAGATAGACCTCCAGGGCCCGGGGCCGTGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAGGCGGCTCTAGCTAATTTATGTATTGGAGATGTAATCACAGCCATTG
ATGGGGAAAATACTAGCAATATGACACACTTGGAAGCTCAGAACAGAATCAAAGGCTGCACAGACAACTTGACTCTCACT
GTAGCCAGATCTGAACATAAAGTCTGGTCTCCTCTGGTGACGGAGGAAGGGAAGCGTCATCCATACAAGATGAATTTAGC
CTCTGAACCCCAGGAGGTCCTGCACATAGGAAGCGCCCACAACCGAAGTGCCATGCCCTTTACCGCCTCGCCTGCCTCCA
GCACTACTGCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCTTCTGAAAATATCTCCAACTTCAAC
AATGCCCTGGAGTCAAAGACTGCTGCCAGCGGGGTGGAGGCGAACAGCAGACCCTTAGACCATGCTCAGCCTCCAAGCAG
CCTTGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTGAATGAGCCCCCGAAACAGTCCA
CGTCTTTCTTGGTTTTGCAGGAAATCCTGGAGTCTGAAGAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTT
AAAGCTCCTGTCACTAAAGTGGCTGCGTCGATTGGAAATGCTCAGAAGTTGCCTATGTGTGACAAATGTGGCACTGGGAT
TGTTGGTGTGTTTGTGAAGCTGCGGGACCGTCACCGCCACCCTGAGTGTTATGTGTGCACTGACTGTGGCACCAACCTGA
AACAGAAGGGCCATTTCTTTGTGGAGGATCAAATCTACTGTGAGAAGCATGCCCGGGAGCGAGTCACACCACCTGAGGGT
TATGAAGTGGTCACTGTGTTCCCCAAGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 243 .31 RPM
bodymap2_adrenal 368 .45 RPM
bodymap2_brain 13 .67 RPM
bodymap2_breast 126 .79 RPM
bodymap2_colon 178 .43 RPM
bodymap2_heart 193 .49 RPM
bodymap2_kidney 56 .68 RPM
bodymap2_liver 67 .95 RPM
bodymap2_lung 719 .52 RPM
bodymap2_lymph_node 217 .15 RPM
bodymap2_ovary 45 .55 RPM
bodymap2_prostate 160 .63 RPM
bodymap2_skeletal_muscle 240 .79 RPM
bodymap2_testis 65 .91 RPM
bodymap2_thyroid 159 .24 RPM
bodymap2_white_blood_cells 38 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Macaca mulatta ENSMMUG00000000454 ortholog_one2one 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1815 63.69 50.76
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2. retro_hsap_2681 65.92 53.19
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Download FASTA sequences of all ENSG00000107438 retrocopies