Parental gene:

Pdlim1, ENSMUSG00000055044

Aliases:None
Description:PDZ and LIM domain 1 (elfin) [Source:MGI Symbol;Acc:MGI:1860611]
Organism:Mouse (Mus musculus)
Coordinates:19:40221172..40271842(-)


>ENSMUSG00000055044
ATGACCACCCAGCAGATTGTTCTCCAGGGCCCGGGTCCCTGGGGTTTCCGCCTCGTGGGCGGCAAGGACTTCGAACAACC
TCTCGCCATTTCCCGGGTCACTCCCGGAAGCAAGGCTGCTATAGCGAATTTATGTATTGGAGATTTAATCACAGCCATCG
ATGGGGAAGATACCAGCAGCATGACACACTTGGAAGCTCAGAACAAAATCAAGGGCTGCGCAGACAACATGACGCTCACA
GTATCCAGGTCTGAACAGAAGATTTGGTCTCCTCTAGTGACCGAGGAGGGGAAACGTCATCCCTACAAGATGAATTTAGC
GTCGGAACCCCAAGAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCA
GCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCT
GTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCCCGTGGTTCAGCCTCATCCCTCCGGCAGCCTTAT
CATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCT
TCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAGGGGATCCCAACAAGCCATCAGGATTTAGAAGTGTTAAAGCT
CCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGCTGCCCATCTGTGACAAATGTGGAACTGGTATTGTTGG
TGTGTTTGTGAAGCTGAGGGATCACCATCGCCACCCTGAATGCTATGTGTGCACCGACTGTGGCATCAACCTGAAACAGA
AGGGCCATTTCTTTGTAGAGGATCAGATCTACTGTGAAAAGCATGCCCGGGAGCGGGTCACTCCGCCTGAGGGCTACGAT
GTGGTCACAGTGTTCCGCGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain 4 .67 RPM
SRP007412_cerebellum 3 .99 RPM
SRP007412_heart 38 .73 RPM
SRP007412_kidney 10 .16 RPM
SRP007412_liver 24 .80 RPM
SRP007412_testis 3 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2many 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_779 80.79 99.39
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2. retro_mmus_2558 97.63 90.21
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Download FASTA sequences of all ENSMUSG00000055044 retrocopies