Parental gene:

SNRPC, ENSG00000124562

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]
Organism:Human (Homo sapiens)
Coordinates:6:34725182..34741571(+)


>ENSG00000124562
ATGCCCAAGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGG
AAGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAA
CGGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCAGGGGCGATGATACCACCTCCC
CCCAGCCTTCCGGGTCCTCCTCGCCCTGGTATGATGCCAGCACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGG
CCCTCCTCCTCCTGGGATGATGCCAGTGGGACCTGCTCCTGGAATGAGGCCGCCCATGGGAGGCCATATGCCAATGATGC
CTGGGCCCCCAATGATGAGACCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCCGGAATGACTCGACCAGACAGATAA

Library Parental gene expression (RPM)
bodymap2_adipose 16 .28 RPM
bodymap2_adrenal 31 .52 RPM
bodymap2_brain 15 .14 RPM
bodymap2_breast 17 .49 RPM
bodymap2_colon 19 .55 RPM
bodymap2_heart 37 .37 RPM
bodymap2_kidney 21 .86 RPM
bodymap2_liver 20 .30 RPM
bodymap2_lung 18 .11 RPM
bodymap2_lymph_node 26 .79 RPM
bodymap2_ovary 20 .88 RPM
bodymap2_prostate 32 .53 RPM
bodymap2_skeletal_muscle 28 .50 RPM
bodymap2_testis 49 .11 RPM
bodymap2_thyroid 29 .04 RPM
bodymap2_white_blood_cells 27 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000024549 ortholog_one2one 1 retrogene
retro_btau_1636,
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Loxodonta africana ENSLAFG00000013534 ortholog_one2one 2 retrogenes
retro_lafr_621, retro_lafr_878,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 ortholog_one2one 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1531 63.09 81.67
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2. retro_hsap_1866 59.44 78.33
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3. retro_hsap_2865 71.09 79.87
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4. retro_hsap_3195 88.68 100.00
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5. retro_hsap_3829 67.53 94.34
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6. retro_hsap_4241 70.87 62.26
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Download FASTA sequences of all ENSG00000124562 retrocopies