Parental gene:

TPM4, ENSG00000167460

Aliases:TPM4, HEL-S-108
Description:tropomyosin 4 [Source:HGNC Symbol;Acc:12013]
Organism:Human (Homo sapiens)
Coordinates:19:16177830..16213813(+)


>ENSG00000167460
ATGGAGGCCATCAAGAAGAAAATGCAGATGCTGAAGTTGGACAAGGAGAATGCCATCGACCGCGCGGAGCAGGCGGAGGC
GGATAAGAAAGCCGCTGAGGACAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAACTAAAAGGGACAG
AGGACGAGCTGGATAAATATTCCGAGGACCTGAAGGACGCGCAGGAGAAGCTGGAGCTCACGGAGAAGAAGGCCTCCGAC
GCTGAAGGTGATGTGGCCGCCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGC
CACGGCCCTGCAGAAGCTGGAGGAGGCAGAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGG
CCATGAAGGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGC
AAATACGAGGAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGA
ACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGT
ATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA
TTTGCAGAGAGAACGGTTGCAAAACTGGAAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAA
CGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTTAACTGTATATAA

Library Parental gene expression (RPM)
bodymap2_adipose 717 .16 RPM
bodymap2_adrenal 529 .36 RPM
bodymap2_brain 154 .12 RPM
bodymap2_breast 317 .96 RPM
bodymap2_colon 542 .29 RPM
bodymap2_heart 107 .68 RPM
bodymap2_kidney 295 .73 RPM
bodymap2_liver 50 .80 RPM
bodymap2_lung 1591 .70 RPM
bodymap2_lymph_node 419 .69 RPM
bodymap2_ovary 886 .43 RPM
bodymap2_prostate 516 .99 RPM
bodymap2_skeletal_muscle 56 .67 RPM
bodymap2_testis 440 .37 RPM
bodymap2_thyroid 210 .46 RPM
bodymap2_white_blood_cells 316 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000014135 ortholog_one2one 1 retrogene
retro_cjac_206,
Homo sapiens ENSG00000143549 within_species_paralog 9 retrogenes
retro_hsap_1482, retro_hsap_1639, retro_hsap_2001, retro_hsap_2011, retro_hsap_2012, retro_hsap_2237, retro_hsap_2395, retro_hsap_3711, retro_hsap_3893,
Gorilla gorilla ENSGGOG00000014510 ortholog_one2one 4 retrogenes
retro_ggor_1836, retro_ggor_2665, retro_ggor_2801, retro_ggor_609,
Oryctolagus cuniculus ENSOCUG00000009884 ortholog_one2one 1 retrogene
retro_ocun_1652,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2623 95.02 89.11
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2. retro_hsap_3969 93.36 89.11
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Download FASTA sequences of all ENSG00000167460 retrocopies