Parental gene: | MAD1L1, ENSLACG00000017346 |
| Aliases: | None |
| Description: | None |
| Organism: | Coelacanth (Latimeria chalumnae) |
| Coordinates: | JH126642.1:1651529..2368619(+) |
>ENSLACG00000017346
ATGGAAGATTTAGAAGACAACACCACTGTGTTCACTACATTGAGATCCTTCAATAATTTCTTGTCTCAGCGAACTGAAGC
GACCCCTGTGCCAGAAACTAGCTCCGCATCTTGCTCACTGCAGCTTCAGTATCGGAAGAGAATGCAGCTGGAGGAGCAGG
CAGAGCAGATCCACTCCAAATCACAGTTGCTGCAAGTGGAGCGGGAAAAGATGCAGATGGAGCTAAGCCACAAACGGGCC
CGGATTGAGCTGGAGAAGGCGGCACAGAACAATGCCAAGAACTATGAGCGTGTGGCGGACCAGAACCAGGAGCTACTGGG
CCGAATAAAGTACCATCAAGAAAAGGAGTCTGAGGCAGAGAAGAAACTGCAGGAGCAAATTGAAATAAATAAAATCTATA
AGAAAAGCATGGAGACTCAGAACAAGAAATTGCAGGAGAAAGAAAGTAAGCTGGCTGAGGCCAATGAGATGATCAGCGTA
CTGAAGGCAAAGATCTCAGAGCTGCAGCACAAATCCATGAATCAGGAGAGGCAGCAGGTGATATGGGACACAGAGCGCCA
GGAACTGCATGAGAAAGTGGAGATTCAGCGCAAGAAATGGCAGGAAGCCACTCAGAAACTGCAGATGCTCCAGGTGGCCC
AGACAATCAGTGAGGAGAATGAACAGAAGATAAAGGATCTGGAGACTAAGCTGTCACTGCAGGAGCAAGACTCTGTGATT
GTGAAGAATATGAAATCAGACCTAGCTCGAGTTCCTGAAATGGAGAAGGAACTGCGTCGGCTTAGAGAGGAGAATGCCTT
TCACAGGGAAACGAAGGAAAATAATGCACTGTTGCAAGAAGAGGTGGAGGGTCTGCACAGAAAAGTGGAACGTTATGAAA
AAATGAGAGAGGATATGGTGAATTTGGAACTGGAAAAAGAGAAACTTTTGGGGAAGCTGAAAGGCTGGGAGAACTTGAAA
CAGATGACTGGCTTAAATATTGAGAGCCCTGAAGATCTGTCAAGGGAAATCATTATTCTGCAGCAGAAGGAGATCACCCT
GAAGCAACAGCACAACTCTGTCACCAACAGTGCCCGGGCTTTGGAGAAGGCTCGGCAGCAGCTCCAAGAAGAAGTGTTGC
ACCTTCGAACCCGGAACTTGGAGAACGAGAATAAACAGGAGCAGCAGAATGCTCTTGTTCGCCGACTGCAGAAGCGTGTC
CTACTTCTAACTAAGGAGCGTGATGGAATGAGGGCAATTTTAGAATCATATGACAGTGAGCTGACTGCTTCAGAATATTC
CCCTCAGCTGAGCCATCGTGTGCGTGAGGCAGAAGAAATGGTGCACAAGGTGCATGTACGTAACGCAGAGCTAGAGGTAG
AGCTGTCCAAGGCTTTGGAAGAAGTTGGAAGTCACAAGCTTAAAGCCCAGACTTTAGAAGCTGAGTTGAAAATCTTGAAG
AATGAGGCGGCCATAGCAGAGAAGAGCTCTTTTATTAACAGCGAGGAGGCCAATTCTCTCAGACAGAAGATTGAGGAGCT
AGAGGGAGAGCGGGGACGTCTGGAGGAGGAGAACAGAGGGCTGATGATGAGGCTTGAAAGAAGCAACCTACAGGGTGATT
ATGATCCCACCAGAATAAAAGTGATTCATTTCAGCCAGAACCCTGTCAACTTAGCAAAGCAGCATAACATTGCAGAGTTG
CATCAACTGCGAGAGGAATGTGAGCGATTGCGAGAGCTGGTCAGAGTCCTGGAGGGAGGAGGAAGTGTCCCAGAGAAACT
GGAGGGTGCTGTGAACTTGCCATCATCCCAAGAAATAACAGATCTGCGTAAGCAAGTAGAGAGTGCAGAGCTGAAGAACC
AGCGTCTGAAGGAGGTGTTCCAGAAGAAGATCCAAGAGTTTAGGACCGTATGCTACACACTGACGGGATTCCAGATTGAC
ATCACCACAGAGAACCAGTATCGTTTGACCTCTATGTATGCTGAGCACAAGGATGACTGCCTACTCTTTAAGGTAGGAAC
AGAGCAACTCTCACTGTACTGCATATATAGATTAGTGGACTTTTTTGTTTGT
ATGGAAGATTTAGAAGACAACACCACTGTGTTCACTACATTGAGATCCTTCAATAATTTCTTGTCTCAGCGAACTGAAGC
GACCCCTGTGCCAGAAACTAGCTCCGCATCTTGCTCACTGCAGCTTCAGTATCGGAAGAGAATGCAGCTGGAGGAGCAGG
CAGAGCAGATCCACTCCAAATCACAGTTGCTGCAAGTGGAGCGGGAAAAGATGCAGATGGAGCTAAGCCACAAACGGGCC
CGGATTGAGCTGGAGAAGGCGGCACAGAACAATGCCAAGAACTATGAGCGTGTGGCGGACCAGAACCAGGAGCTACTGGG
CCGAATAAAGTACCATCAAGAAAAGGAGTCTGAGGCAGAGAAGAAACTGCAGGAGCAAATTGAAATAAATAAAATCTATA
AGAAAAGCATGGAGACTCAGAACAAGAAATTGCAGGAGAAAGAAAGTAAGCTGGCTGAGGCCAATGAGATGATCAGCGTA
CTGAAGGCAAAGATCTCAGAGCTGCAGCACAAATCCATGAATCAGGAGAGGCAGCAGGTGATATGGGACACAGAGCGCCA
GGAACTGCATGAGAAAGTGGAGATTCAGCGCAAGAAATGGCAGGAAGCCACTCAGAAACTGCAGATGCTCCAGGTGGCCC
AGACAATCAGTGAGGAGAATGAACAGAAGATAAAGGATCTGGAGACTAAGCTGTCACTGCAGGAGCAAGACTCTGTGATT
GTGAAGAATATGAAATCAGACCTAGCTCGAGTTCCTGAAATGGAGAAGGAACTGCGTCGGCTTAGAGAGGAGAATGCCTT
TCACAGGGAAACGAAGGAAAATAATGCACTGTTGCAAGAAGAGGTGGAGGGTCTGCACAGAAAAGTGGAACGTTATGAAA
AAATGAGAGAGGATATGGTGAATTTGGAACTGGAAAAAGAGAAACTTTTGGGGAAGCTGAAAGGCTGGGAGAACTTGAAA
CAGATGACTGGCTTAAATATTGAGAGCCCTGAAGATCTGTCAAGGGAAATCATTATTCTGCAGCAGAAGGAGATCACCCT
GAAGCAACAGCACAACTCTGTCACCAACAGTGCCCGGGCTTTGGAGAAGGCTCGGCAGCAGCTCCAAGAAGAAGTGTTGC
ACCTTCGAACCCGGAACTTGGAGAACGAGAATAAACAGGAGCAGCAGAATGCTCTTGTTCGCCGACTGCAGAAGCGTGTC
CTACTTCTAACTAAGGAGCGTGATGGAATGAGGGCAATTTTAGAATCATATGACAGTGAGCTGACTGCTTCAGAATATTC
CCCTCAGCTGAGCCATCGTGTGCGTGAGGCAGAAGAAATGGTGCACAAGGTGCATGTACGTAACGCAGAGCTAGAGGTAG
AGCTGTCCAAGGCTTTGGAAGAAGTTGGAAGTCACAAGCTTAAAGCCCAGACTTTAGAAGCTGAGTTGAAAATCTTGAAG
AATGAGGCGGCCATAGCAGAGAAGAGCTCTTTTATTAACAGCGAGGAGGCCAATTCTCTCAGACAGAAGATTGAGGAGCT
AGAGGGAGAGCGGGGACGTCTGGAGGAGGAGAACAGAGGGCTGATGATGAGGCTTGAAAGAAGCAACCTACAGGGTGATT
ATGATCCCACCAGAATAAAAGTGATTCATTTCAGCCAGAACCCTGTCAACTTAGCAAAGCAGCATAACATTGCAGAGTTG
CATCAACTGCGAGAGGAATGTGAGCGATTGCGAGAGCTGGTCAGAGTCCTGGAGGGAGGAGGAAGTGTCCCAGAGAAACT
GGAGGGTGCTGTGAACTTGCCATCATCCCAAGAAATAACAGATCTGCGTAAGCAAGTAGAGAGTGCAGAGCTGAAGAACC
AGCGTCTGAAGGAGGTGTTCCAGAAGAAGATCCAAGAGTTTAGGACCGTATGCTACACACTGACGGGATTCCAGATTGAC
ATCACCACAGAGAACCAGTATCGTTTGACCTCTATGTATGCTGAGCACAAGGATGACTGCCTACTCTTTAAGGTAGGAAC
AGAGCAACTCTCACTGTACTGCATATATAGATTAGTGGACTTTTTTGTTTGT
| Library | Parental gene expression (RPM) |
|---|---|
| DRP000627_pectoral_fin | 3 .42 RPM |
| DRP000627_kidney | 0 .58 RPM |
| DRP000627_pelvic_fin | 3 .94 RPM |
| DRP000627_pharynx | 0 .51 RPM |
| DRP000627_gill | 1 .12 RPM |
| DRP000627_tail_muscle | 0 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000014242 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_lcha_33 | 73.33 | 87.84 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_lcha_36 | 72.31 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_lcha_41 | 64.43 | 87.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_lcha_44 | 53.33 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_lcha_60 | 57.07 | 92.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_lcha_66 | 74.18 | 81.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_lcha_70 | 61.46 | 92.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_lcha_79 | 69.19 | 82.88 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_lcha_80 | 64.62 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_lcha_93 | 77.95 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_lcha_99 | 80.00 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_lcha_102 | 82.99 | 87.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_lcha_106 | 79.49 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_lcha_109 | 77.55 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_lcha_113 | 55.05 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_lcha_114 | 57.79 | 87.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_lcha_115 | 59.03 | 62.61 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSLACG00000017346 retrocopies