Parental gene:

Ptbp1, ENSMUSG00000006498

Aliases:Ptbp1, AA407203, AL033359, HNRPI, PTB-1, PTB2, PTB3, PTB4, Ptb, pPTB
Description:polypyrimidine tract binding protein 1 [Source:MGI Symbol;Acc:MGI:97791]
Organism:Mouse (Mus musculus)
Coordinates:10:79854426..79864771(+)


>ENSMUSG00000006498
ATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGG
CCCCTTCATCATGAGCAGCTCTGCCTCAGCAGCCAATGGAAACGATAGCAAGAAGTTCAAAGGTGACAACAGGAGCGCAG
GAGTCCCTTCCAGAGTCATCCATGTCAGAAAGCTGCCCAGCGATGTCACTGAGGGCGAGGTCATCTCCCTAGGGCTGCCC
TTTGGAAAGGTTACCAACCTTCTCATGCTGAAGGGGAAGAACCAGGCCTTCATTGAGATGAACACAGAGGAGGCTGCCAA
CACTATGGTTAACTACTATACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAAG
AGCTCAAGACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTAAACTCCGTCCAGTCTGGAAAC
CTGGCCTTGGCAGCGTCCGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGGCAGAGCCCAGTGCTCAGGATCATTGT
GGAAAACCTTTTCTACCCAGTGACCCTGGACGTGCTGCACCAGATCTTCTCTAAGTTTGGCACCGTCCTGAAGATCATCA
CGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTG
GATGGCCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAATGTCAAGTACAA
CAATGATAAGAGCAGAGACTACACTCGACCTGACCTGCCCTCTGGAGACAGCCAGCCTTCACTAGACCAGACCATGGCAG
CAGCCTTTGGTGCGCCCGGCATAATGTCAGCCTCTCCGTATGCAGGAGCCGGGTTCCCTCCCACCTTTGCCATCCCTCAG
GCCGCAGGCCTCTCTGTCCCTAATGTCCATGGAGCCTTGGCCCCCCTGGCCATCCCGTCTGCTGCTGCTGCTGCTGCGGC
CAGCCGCATTGCCATCCCAGGGTTGGCAGGTGCTGGGAATTCTGTCCTTTTGGTCAGCAATCTGAACCCTGAGAGAGTCA
CACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAATAAGAAGGAGAAC
GCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCACGGGAAGTC
AGTGCGCATTACACTGTCCAAGCATCAGAGTGTGCAGCTGCCTCGGGAGGGTCAGGAGGACCAGGGCCTGACCAAGGACT
ATGGCAGCTCCCCGCTGCACCGCTTCAAGAAACCAGGCTCCAAGAACTTCCAGAACATCTTTCCACCCTCAGCTACCCTG
CACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGACGACCTCAAGAGCCTCTTCTCCAGCAACGGTGGTGTGGTCAAAGG
CTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCTGTGCAGGCGCTGATTG
AACTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP007412_brain 22 .78 RPM
SRP007412_cerebellum 31 .78 RPM
SRP007412_heart 33 .18 RPM
SRP007412_kidney 81 .75 RPM
SRP007412_liver 63 .82 RPM
SRP007412_testis 68 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Equus caballus ENSECAG00000018845 ortholog_one2one 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Macropus eugenii ENSMEUG00000006710 ortholog_one2one 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2one 1 retrogene
retro_mluc_755,
Rattus norvegicus ENSRNOG00000010448 ortholog_one2many 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1072 93.10 80.72
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Download FASTA sequences of all ENSMUSG00000006498 retrocopies