Parental gene:

Snrpc, ENSMUSG00000024217

Aliases:Snrpc, Snrp1c, U1-C, U1C
Description:U1 small nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:109489]
Organism:Mouse (Mus musculus)
Coordinates:17:27839973..27851968(+)


>ENSMUSG00000024217
ATGCCCAAGTTTTATTGTGACTACTGTGATACGTATCTTACCCACGATTCTCCATCTGTGAGGAAGACACACTGCAGTGG
TCGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCCCAGAGCCTGATTGACAAGACAA
CGGCTGCATTTCAACAAGGGAAGATCCCTCCTGCTCCGTTCTCTGCTCCTCCGCCTGCAGGGGCCATGATCCCACCTCCC
CCCAGTCTCCCGGGCCCTCCTCGGCCTGGCATGATGCCTGCCCCCCACATGGGAGGCCCTCCCATGATGCCAATGATGGG
CCCCCCTCCGCCCGGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGACCACCCATGGGAGGCCACATGCCCATGATGC
CCGGACCTCCCATGATGAGACCTCCTGCCCGCCCTATGATGGTGCCCACCCGGCCTGGCATGACCCGGCCAGACAGATAA

Library Parental gene expression (RPM)
SRP007412_brain 9 .32 RPM
SRP007412_cerebellum 10 .86 RPM
SRP007412_heart 7 .94 RPM
SRP007412_kidney 11 .57 RPM
SRP007412_liver 6 .69 RPM
SRP007412_testis 51 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Rattus norvegicus ENSRNOG00000000493 ortholog_one2one 30 retrogenes
retro_rnor_1027, retro_rnor_1079, retro_rnor_1100, retro_rnor_1196, retro_rnor_1219, retro_rnor_1421, retro_rnor_1628, retro_rnor_1637, retro_rnor_1701, retro_rnor_1761, retro_rnor_2259, retro_rnor_2261, retro_rnor_2385, retro_rnor_2480, retro_rnor_2663, retro_rnor_2875, retro_rnor_2893, retro_rnor_445, retro_rnor_483, retro_rnor_495, retro_rnor_502, retro_rnor_630, retro_rnor_705, retro_rnor_706, retro_rnor_707, retro_rnor_730, retro_rnor_747, retro_rnor_778, retro_rnor_802, retro_rnor_889,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,
Sus scrofa ENSSSCG00000001531 ortholog_one2one 1 retrogene
retro_sscr_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_431 90.06 100.00
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2. retro_mmus_531 65.94 84.91
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3. retro_mmus_566 65.93 55.97
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4. retro_mmus_638 85.09 100.00
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5. retro_mmus_1079 72.29 99.37
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6. retro_mmus_1084 78.88 100.00
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7. retro_mmus_1231 77.99 100.00
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8. retro_mmus_1313 95.03 100.00
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9. retro_mmus_1374 95.00 100.00
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10. retro_mmus_1400 99.37 100.00
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11. retro_mmus_1515 66.28 52.83
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12. retro_mmus_1649 75.22 71.07
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13. retro_mmus_1673 59.43 64.15
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14. retro_mmus_1781 80.86 100.00
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15. retro_mmus_1876 95.00 100.00
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16. retro_mmus_2087 81.25 100.00
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17. retro_mmus_2211 88.75 100.00
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18. retro_mmus_2506 86.39 91.82
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19. retro_mmus_2973 84.38 100.00
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20. retro_mmus_3089 73.75 100.00
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21. retro_mmus_3366 76.74 80.50
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Download FASTA sequences of all ENSMUSG00000024217 retrocopies