Parental gene:

SNRPC, ENSSSCG00000001531

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide C [Source:HGNC Symbol;Acc:11157]
Organism:Pig (Sus scrofa)
Coordinates:7:35451545..35466721(+)


>ENSSSCG00000001531
ATGCCCAAGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACACACTGCAGTGG
TAGGAAGCACAAAGAGAATGTGAAAGACTACTATCAGAAATGGATGGAAGAGCAGGCTCAGAGCCTGATTGACAAAACAA
CCGCTGCATTTCAGCAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCTCCTCCTGCGGGGGCAATGATCCCACCTCCT
CCCAGTCTCCCGGGTCCTCCTCGTCCTGGTATGATGCCAGCACCCCACATGGGGGGCCCTCCCATGATGCCAATGATGGG
CCCCCCTCCTCCTGGGATGATGCCCGTGGGACCTGCTCCTGGAATGAGGCCGCCTATGGGAGGCCACATGCCAATGATGC
CTGGGCCCCCAATGATGAGACCTCCCGCCCGCCCCATGATGGTGCCCACTCGGCCAGGAATGACTCGGCCAGACAGATAA

Library Parental gene expression (RPM)
SRP014902_placenta 17 .79 RPM
SRP014902_testis 20 .09 RPM
SRP018288_heart 26 .06 RPM
SRP018288_kidney 22 .07 RPM
SRP018288_liver 23 .99 RPM
SRP018288_lung 66 .09 RPM
SRP018856_adipose 20 .97 RPM
SRP035408_brain 21 .25 RPM
SRP035408_liver 18 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Mus musculus ENSMUSG00000024217 ortholog_one2one 21 retrogenes
retro_mmus_1079, retro_mmus_1084, retro_mmus_1231, retro_mmus_1313, retro_mmus_1374, retro_mmus_1400, retro_mmus_1515, retro_mmus_1649, retro_mmus_1673, retro_mmus_1781, retro_mmus_1876, retro_mmus_2087, retro_mmus_2211, retro_mmus_2506, retro_mmus_2973, retro_mmus_3089, retro_mmus_3366, retro_mmus_431, retro_mmus_531, retro_mmus_566, retro_mmus_638,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Rattus norvegicus ENSRNOG00000000493 ortholog_one2one 30 retrogenes
retro_rnor_1027, retro_rnor_1079, retro_rnor_1100, retro_rnor_1196, retro_rnor_1219, retro_rnor_1421, retro_rnor_1628, retro_rnor_1637, retro_rnor_1701, retro_rnor_1761, retro_rnor_2259, retro_rnor_2261, retro_rnor_2385, retro_rnor_2480, retro_rnor_2663, retro_rnor_2875, retro_rnor_2893, retro_rnor_445, retro_rnor_483, retro_rnor_495, retro_rnor_502, retro_rnor_630, retro_rnor_705, retro_rnor_706, retro_rnor_707, retro_rnor_730, retro_rnor_747, retro_rnor_778, retro_rnor_802, retro_rnor_889,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_709 98.00 62.89
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Download FASTA sequences of all ENSSSCG00000001531 retrocopies