Parental gene: | Tdg, ENSMUSG00000034674 |
| Aliases: | Tdg, E130317C12Rik, JZA-3, Jza1 |
| Description: | thymine DNA glycosylase [Source:MGI Symbol;Acc:MGI:108247] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 10:82629827..82650799(+) |
>ENSMUSG00000034674
ATGGACGCAGAGGCCGCGCGCAGCTATTCTCTGGAGCAAGTTCAAGCTTTGTATTCATTTCCATTTCAACAAATGATGGC
AGAAGTTCCTAACATGGCAGTCACGACTGGACAGCAGGTGCCAGCAGTAGCTCCTAACATGGCAACCGTGACAGAACAGC
AGGTGCCCGAAGACGCTCCTGTCCAGGAACCTGCACCAGAAGCTCCAAAGAGAAGGAAAAGGAAACCCAGAGCAGCAGAG
CCCCAGGAACCAGTGGAGCCCAAAAAACCTGCTACGTCGAAGAAATCCGGCAAGTCTACAAAATCAAAGGAAAAGCAGGA
GAAAATCACAGACGCGTTTAAAGTGAAAAGGAAAGTGGACCGCTTCAACGGCGTCTCTGAAGCTGAGCTTCTGACCAAGA
CTCTTCCTGACATTTTGACCTTCAATCTGGATATTGTGATCATTGGCATTAACCCGGGATTAATGGCTGCTTACAAAGGA
CATCACTACCCTGGGCCTGGAAATCACTTCTGGAAGTGTCTGTTCATGTCGGGGCTGAGTGAGGTGCAGCTGAATCACAT
GGATGACCACACCTTACCCGGCAAGTACGGCATCGGATTCACCAACATGGTGGAACGGACGACGCCGGGCAGCAAGGATC
TGTCTAGTAAAGAGTTCCGGGAAGGAGGGCGCATCCTGGTGCAGAAACTGCAGAAATATCAGCCACGAATAGCGGTGTTT
AATGGAAAATGTATTTATGAAATTTTCAGTAAAGAAGTTTTTGGAGTAAAGGTTAAGAACTTGGAATTTGGGCTTCAACC
CCACAAGATCCCAGACACAGAAACTCTGTGCTACGTCATGCCGTCGTCCAGCGCCAGATGTGCTCAGTTTCCCCGGGCCC
AGGACAAAGTTCATTACTACATTAAGCTGAAGGACTTGAGAGACCAACTGAAAGGCATTGAACGCAACGCGGACGTTCAG
GAAGTGCAGTATACATTTGACCTGCAGCTTGCGCAAGAGGACGCAAAGAAGATGGCTGTTAAGGAAGAAAAGTATGATCC
AGGCTATGAGGCAGCTTACGGCGGTGCCTATGGGGAAAACCCATGTAATGGGGAACCTTGTGGCATTGCTTCAAATGGGC
TAACAGCTCACAGTGCGGAGCCGAGAGGAGAAGCGGCCCCCAGCGATGTTCCGAATGGGCAGTGGATGGCACAGTCGTTT
GCAGAGCAGATCCCTTCTTTTAATAATTGTGGGACCCGAGAGCAGGAAGAAGAGAGCCACGCTTAG
ATGGACGCAGAGGCCGCGCGCAGCTATTCTCTGGAGCAAGTTCAAGCTTTGTATTCATTTCCATTTCAACAAATGATGGC
AGAAGTTCCTAACATGGCAGTCACGACTGGACAGCAGGTGCCAGCAGTAGCTCCTAACATGGCAACCGTGACAGAACAGC
AGGTGCCCGAAGACGCTCCTGTCCAGGAACCTGCACCAGAAGCTCCAAAGAGAAGGAAAAGGAAACCCAGAGCAGCAGAG
CCCCAGGAACCAGTGGAGCCCAAAAAACCTGCTACGTCGAAGAAATCCGGCAAGTCTACAAAATCAAAGGAAAAGCAGGA
GAAAATCACAGACGCGTTTAAAGTGAAAAGGAAAGTGGACCGCTTCAACGGCGTCTCTGAAGCTGAGCTTCTGACCAAGA
CTCTTCCTGACATTTTGACCTTCAATCTGGATATTGTGATCATTGGCATTAACCCGGGATTAATGGCTGCTTACAAAGGA
CATCACTACCCTGGGCCTGGAAATCACTTCTGGAAGTGTCTGTTCATGTCGGGGCTGAGTGAGGTGCAGCTGAATCACAT
GGATGACCACACCTTACCCGGCAAGTACGGCATCGGATTCACCAACATGGTGGAACGGACGACGCCGGGCAGCAAGGATC
TGTCTAGTAAAGAGTTCCGGGAAGGAGGGCGCATCCTGGTGCAGAAACTGCAGAAATATCAGCCACGAATAGCGGTGTTT
AATGGAAAATGTATTTATGAAATTTTCAGTAAAGAAGTTTTTGGAGTAAAGGTTAAGAACTTGGAATTTGGGCTTCAACC
CCACAAGATCCCAGACACAGAAACTCTGTGCTACGTCATGCCGTCGTCCAGCGCCAGATGTGCTCAGTTTCCCCGGGCCC
AGGACAAAGTTCATTACTACATTAAGCTGAAGGACTTGAGAGACCAACTGAAAGGCATTGAACGCAACGCGGACGTTCAG
GAAGTGCAGTATACATTTGACCTGCAGCTTGCGCAAGAGGACGCAAAGAAGATGGCTGTTAAGGAAGAAAAGTATGATCC
AGGCTATGAGGCAGCTTACGGCGGTGCCTATGGGGAAAACCCATGTAATGGGGAACCTTGTGGCATTGCTTCAAATGGGC
TAACAGCTCACAGTGCGGAGCCGAGAGGAGAAGCGGCCCCCAGCGATGTTCCGAATGGGCAGTGGATGGCACAGTCGTTT
GCAGAGCAGATCCCTTCTTTTAATAATTGTGGGACCCGAGAGCAGGAAGAAGAGAGCCACGCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 9 .81 RPM |
| SRP007412_cerebellum | 7 .25 RPM |
| SRP007412_heart | 5 .07 RPM |
| SRP007412_kidney | 6 .51 RPM |
| SRP007412_liver | 5 .05 RPM |
| SRP007412_testis | 3 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000013722 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019930 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000139372 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003813 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000016313 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000027124 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_637 | 99.17 | 85.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1125 | 69.30 | 77.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1363 | 99.17 | 85.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_3040 | 99.18 | 86.46 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000034674 retrocopies