Parental gene: | TDG, ENSOCUG00000016313 |
| Aliases: | None |
| Description: | thymine-DNA glycosylase [Source:HGNC Symbol;Acc:11700] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 4:83134720..83142370(+) |
>ENSOCUG00000016313
GTTTCAGAGGCTCCAAAAGGAAGAAAAAGAAAAACTCGAGCAACAGAACCCAAAAAACCAGCAGAACCCAAAAAACCTGC
TGAGGCAAAAAAATCTGGCAAATCTGCCAAGTCAAAGGAAAAGCAAGAAAAAATTACAGATGCGTTTAAGGTGAAAAGGA
AAGTGGACCGTTTTAATGGCGTGTCAGAGGCTGAACTTCTGACCAAGACTCTCCCTGATATTTTGACCTTCAACCTGGAC
ATTGTAATTATTGGCATAAATCCAGGACTAATGGCTGCTTACAAAGGACATCATTACCCTGGACCTGGAAACCATTTTTG
GAAGTGTCTGTTCATGTCAGGGCTGAGTGAGGTCCAGCTGAACCACATGGACGATCACACTTTACCTGGGAAGTATGGCA
TTGGATTTACCAATATGGTGGAGAGGACGACGCCAGGCAGCAAGGATCTTTCCAGTAAAGAATTTCGTGAAGGAGGACGT
ATTCTAGTCCAGAAATTACAGAAATATCAGCCACGAATAGCAGTGTTTAATGGAAAATGTATTTATGAAATTTTTAGTAG
AGAAGTTTTTGGAGTAAAGGTTAAGAACTTGGAATTTGGGCTTCAACCCCACAAGATTCCAGACACAGAAACTCTCTGCT
ATGTGATGCCATCATCCAGTGCAAGGTGTGCTCAGTTTCCTCGCGCTCAGGACAAAGTTCATTACTACATTAAGTTGAAG
GACTTAAGAGATCAGTTGAAAGGCATTGAACGAAACACAGACGTTCAAGAAGTGCGGTATACATTTGACCTACAGCTTGC
CCAAGAGGATGCAAAGAAGATGGCTGTTAAGGAAGAAAAATACGATCCTGGTTATGAAGCAGCCTACGGTGGTGCTTACA
GTGACAACCCGTGCAATAGTGAACCTTGCAGCTTCCCGTCTAATGGGCTAGCTGCGGACAGTGCGGAGTTAAGAGAATCA
GCTCTCAATGCCATTCCAGATGGGCAGTGGATGGCCCAGCCGTTTACAGACCAGATTCCTTCCCTGAACAATCACTGTGG
AGCGCAAGAGCAG
GTTTCAGAGGCTCCAAAAGGAAGAAAAAGAAAAACTCGAGCAACAGAACCCAAAAAACCAGCAGAACCCAAAAAACCTGC
TGAGGCAAAAAAATCTGGCAAATCTGCCAAGTCAAAGGAAAAGCAAGAAAAAATTACAGATGCGTTTAAGGTGAAAAGGA
AAGTGGACCGTTTTAATGGCGTGTCAGAGGCTGAACTTCTGACCAAGACTCTCCCTGATATTTTGACCTTCAACCTGGAC
ATTGTAATTATTGGCATAAATCCAGGACTAATGGCTGCTTACAAAGGACATCATTACCCTGGACCTGGAAACCATTTTTG
GAAGTGTCTGTTCATGTCAGGGCTGAGTGAGGTCCAGCTGAACCACATGGACGATCACACTTTACCTGGGAAGTATGGCA
TTGGATTTACCAATATGGTGGAGAGGACGACGCCAGGCAGCAAGGATCTTTCCAGTAAAGAATTTCGTGAAGGAGGACGT
ATTCTAGTCCAGAAATTACAGAAATATCAGCCACGAATAGCAGTGTTTAATGGAAAATGTATTTATGAAATTTTTAGTAG
AGAAGTTTTTGGAGTAAAGGTTAAGAACTTGGAATTTGGGCTTCAACCCCACAAGATTCCAGACACAGAAACTCTCTGCT
ATGTGATGCCATCATCCAGTGCAAGGTGTGCTCAGTTTCCTCGCGCTCAGGACAAAGTTCATTACTACATTAAGTTGAAG
GACTTAAGAGATCAGTTGAAAGGCATTGAACGAAACACAGACGTTCAAGAAGTGCGGTATACATTTGACCTACAGCTTGC
CCAAGAGGATGCAAAGAAGATGGCTGTTAAGGAAGAAAAATACGATCCTGGTTATGAAGCAGCCTACGGTGGTGCTTACA
GTGACAACCCGTGCAATAGTGAACCTTGCAGCTTCCCGTCTAATGGGCTAGCTGCGGACAGTGCGGAGTTAAGAGAATCA
GCTCTCAATGCCATTCCAGATGGGCAGTGGATGGCCCAGCCGTTTACAGACCAGATTCCTTCCCTGAACAATCACTGTGG
AGCGCAAGAGCAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 5 .16 RPM |
| SRP017611_kidney | 6 .89 RPM |
| SRP017611_brain | 9 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000013722 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019930 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000139372 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003813 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000034674 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000027124 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_1289 | 74.86 | 99.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000016313 retrocopies