Parental gene:

Rbpj, ENSMUSG00000039191

Aliases:Rbpj, AI843960, CBF1, Igkjrb, Igkrsbp, RBP-J, RBP-J kappa, RBPjk, Rbpsuh
Description:recombination signal binding protein for immunoglobulin kappa J region [Source:MGI Symbol;Acc:MGI:96522]
Organism:Mouse (Mus musculus)
Coordinates:5:53555778..53657445(+)


>ENSMUSG00000039191
ATGCCCTCCGGTTTTCCTCAGTCTCCACGTACGTCCCCGAGGGCGCGTCCCAAAACCCGGATAACCGGAGCGCTCCCCAT
GGACTACTCGGAGGGCTTGTCCGCGGAGGAGCGGCCTGCGCATGCTCCATCGGCGGGGAAGTTTGGTGAGCGGCCTCCAC
CCAAACGACTCACTAGGGAAGCTATGCGAAATTATTTAAAAGAACGAGGGGATCAAACAGTGCTCATTCTTCATGCAAAA
GTTGCACAGAAGTCTTACGGAAATGAAAAACGATTTTTTTGCCCTCCTCCTTGTGTGTATCTTATGGGCAGTGGTTGGAA
GAAAAAAAAAGAGCAAATGGAACGAGATGGATGTTCTGAACAAGAGTCTCAACCCTGTGCGTTTATTGGAATAGGAAACA
GTGACCAAGAAATGCAGCAGCTGAACTTGGAAGGGAAGAACTACTGTACAGCCAAAACATTGTACATATCTGATTCAGAC
AAGAGAAAACATTTCATGTTGTCTGTAAAGATGTTCTATGGCAACAGCGATGACATTGGTGTGTTCCTCAGCAAGCGGAT
AAAGGTCATCTCCAAACCCTCCAAAAAGAAGCAGTCACTGAAGAATGCTGACTTGTGCATTGCTTCAGGAACGAAGGTGG
CACTGTTCAATCGCCTTCGGTCCCAGACAGTTAGTACCAGGTACCTGCATGTAGAAGGAGGGAATTTCCACGCCAGTTCA
CAACAGTGGGGAGCATTTTACATCCATCTCTTGGACGACGACGAGTCGGAAGGAGAGGAGTTCACAGTTAGAGATGGCTA
CATCCATTACGGGCAGACTGTCAAGCTTGTGTGCTCAGTGACTGGCATGGCACTCCCAAGATTGATAATTAGGAAAGTTG
ATAAGCAGACGGCATTACTGGATGCAGACGACCCTGTATCACAACTCCACAAATGTGCATTTTACCTTAAGGATACAGAA
AGAATGTACTTGTGCCTTTCTCAAGAAAGAATAATCCAATTTCAGGCCACTCCATGTCCAAAAGAACAAAATAAGGAAAT
GATAAACGATGGAGCTTCCTGGACAATCATTAGCACAGACAAGGCCGAGTACACGTTCTATGAGGGAATGGGCCCCGTCC
TTGCCCCAGTCACCCCTGTGCCTGTCGTAGAAAGTCTTCAGTTGAATGGCGGCGGGGACGTAGCAATGCTTGAACTTACA
GGACAAAACTTTACTCCAAATTTAAGAGTGTGGTTTGGGGATGTAGAAGCCGAAACAATGTACAGATGTGGAGAGAGCAT
GCTCTGTGTGGTCCCAGACATTTCTGCATTCCGGGAAGGTTGGAGATGGGTCCGCCAGCCAGTCCAGGTTCCAGTGACTT
TGGTCCGAAATGACGGGGTCATTTACTCCACCAGCCTTACCTTCACCTACACACCAGAGCCAGGGCCGAGGCCACACTGC
AGCGCTGCAGGAGCGATTCTCAGAGCCAACTCCAGCCAAGTGCCCTCCAATGAGTCAAACACAAACAGCGAGGGGAATTA
CACAAATGCCAGCACAAATTCTACCAGTGTCACATCGTCCACAGCAACCGTGGTGTCCTAA

Library Parental gene expression (RPM)
SRP007412_brain 16 .21 RPM
SRP007412_cerebellum 13 .42 RPM
SRP007412_heart 16 .25 RPM
SRP007412_kidney 13 .11 RPM
SRP007412_liver 5 .30 RPM
SRP007412_testis 4 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003602 ortholog_one2one 1 retrogene
retro_btau_1507,
Choloepus hoffmanni ENSCHOG00000001582 ortholog_one2one 4 retrogenes
retro_chof_1172, retro_chof_1278, retro_chof_2449, retro_chof_371,
Homo sapiens ENSG00000168214 ortholog_one2one 6 retrogenes
retro_hsap_4169, retro_hsap_4171, retro_hsap_4173, retro_hsap_4174, retro_hsap_4256, retro_hsap_4316,
Gorilla gorilla ENSGGOG00000004582 ortholog_one2one 1 retrogene
retro_ggor_2853,
Nomascus leucogenys ENSNLEG00000016895 ortholog_one2one 1 retrogene
retro_nleu_2305,
Oryctolagus cuniculus ENSOCUG00000013449 ortholog_one2one 1 retrogene
retro_ocun_1445,
Pan troglodytes ENSPTRG00000015968 ortholog_one2one 1 retrogene
retro_ptro_2829,
Tursiops truncatus ENSTTRG00000009022 ortholog_one2one 2 retrogenes
retro_ttru_1151, retro_ttru_1593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2348 73.29 63.88
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2. retro_mmus_2819 99.38 99.38
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Download FASTA sequences of all ENSMUSG00000039191 retrocopies