Parental gene:

HDAC2, ENSOANG00000003631

Aliases:None
Description:histone deacetylase 2 [Source:HGNC Symbol;Acc:4853]
Organism:Platypus (Ornithorhynchus anatinus)
Coordinates:Contig12158:7918..20717(+)


>ENSOANG00000003631
ATGAAACCCCACCGGATCCGCATGACCCACAACTTGCTGCTCAACTATGGCTTGTACAGAAAAATGGAAATTTATAGGCC
TCATAAGGCCACAGCTGAAGAAATGACCAAATACCACAGTGATGAATACATCAAATTTCTGCGCTCGATAAGACCAGACA
ACATGTCCGAGTATAGCAAACAGATGCAGAGATTCAATGTTGGAGAAGATTGTCCTGTGTTTGATGGGCTGTTCGAATTC
TGCCAGTTGTCAACCGGAGGGTCTGTAGCTGGGGCGGTGAAATTAAACCGTCAGCAGACTGACATGGCTGTTAACTGGGC
TGGAGGTCTCCATCATGCTAAGAAGTCAGAGGCATCAGGTTTCTGTTACGTGAATGATATTGTGCTTGCCATCCTGGAAT
TACTGAAATACCATCAAAGAGTGTTATACATTGATATCGACATCCATCATGGGGATGGTGTTGAAGAAGCTTTTTATACA
ACAGACCGGGTTATGACAGTATCATTCCATAAGTATGGTGAATACTTCCCTGGTACCGGAGACTTAAGGGATATTGGTGC
AGGAAAAGGAAAGTACTATGCCGTCAACTTTCCGATGAGAGATGGTATAGATGATGAGTCATACGGACAGATATTCAAAC
CAATAATATCAAAAGTGATGGAAATGTATCAGCCTAGTGCTGTAGTATTGCAGTGTGGAGCAGATTCACTGTCGGGAGAC
AGGCTTGGATGTTTCAATCTAACTGTCAAAGGCCATGCAAAATGTGTGGAAGTTGTGAAGACCTTCAACTTACCTCTGCT
GATGCTTGGAGGAGGCGGCTATACAATCCGCAATGTTGCTAGATGCTGGACCTATGAGACTGCTGTTGCCTTAGATTGTG
AAATTCCTAATGAGTTGCCATATAACGATTACTTTGAGTATTTTGGACCCGACTTCAAGCTGCACATTAGTCCCTCAAAT
ATGACAAACCAGAACACCCCAGAATATATGGAGAAGATCAAACAGCGTCTGTTTGAGAACCTGCGTATGTTGCCTCATGC
CCCCGGGGTACAGATGCAAGCTATTCCTGAGGATGCAGTCCATGAAGACAGTGGAGATGAAGATGGAGAAGATCCAGACA
AGAGAATTTCCATTAGAGCATCTGACAAACGGATAGCTTGTGATGAAGAGTTCTCCGACTCTGAGGATGAAGGGGAAGGA
GGGCGTCGGAATGTGGCTGATCACAAGAAAGGAGCAAAGAAAGCCAGAATAGAAGAAGACAAGAAAGAAACAGAGGACAA
GAAAGCAGGTTAG

Library Parental gene expression (RPM)
SRP007412_brain 62 .08 RPM
SRP007412_cerebellum 38 .11 RPM
SRP007412_heart 20 .01 RPM
SRP007412_kidney 50 .34 RPM
SRP007412_liver 5 .79 RPM
SRP007412_testis 79 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Echinops telfairi ENSETEG00000008468 ortholog_one2many 1 retrogene
retro_etel_488,
Myotis lucifugus ENSMLUG00000003117 ortholog_one2many 4 retrogenes
retro_mluc_1570, retro_mluc_225, retro_mluc_2548, retro_mluc_935,
Monodelphis domestica ENSMODG00000017860 ortholog_one2one 1 retrogene
retro_mdom_597,
Pan troglodytes ENSPTRG00000018519 ortholog_one2one 1 retrogene
retro_ptro_69,
Sorex araneus ENSSARG00000000354 ortholog_one2one 1 retrogene
retro_sara_651,
Ictidomys tridecemlineatus ENSSTOG00000012779 ortholog_one2one 1 retrogene
retro_itri_374,
Tarsius syrichta ENSTSYG00000009363 ortholog_one2one 4 retrogenes
retro_tsyr_1337, retro_tsyr_1355, retro_tsyr_681, retro_tsyr_765,
Tursiops truncatus ENSTTRG00000015043 ortholog_one2one 1 retrogene
retro_ttru_462,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_oana_79 58.04 91.63
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Download FASTA sequences of all ENSOANG00000003631 retrocopies