Parental gene: | TKT, ENSOCUG00000015904 |
| Aliases: | None |
| Description: | transketolase [Source:HGNC Symbol;Acc:11834] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 9:20184802..20207587(-) |
>ENSOCUG00000015904
ATGGAAGGCTACCACAAACCCGACCAGCAGAAGCTGCAGGCCCTGAAGGACACGGCCAACCGGCTGCGCATCAGCTCCAT
CCAGGCCACCACCGCGGCGGGCTCGGGCCACCCCACATCATGCTGCAGCGCGGCGGAGATCATGGCCGTACTCTTCTTCC
ACACCATGCGGTACAAGGCCCAGGACCCCCGGAACCCTCACAATGACCGCTTTATACTCTCCAAGGGCCACGCAGCTCCC
ATCCTGTATGCCGTCTGGGCTGAAGCTGGCTACCTGCCCGAGGCAGAGCTGCTGAACCTGAGGAAGATCAGCTCCGACCT
GGACGGGCACCCTGTCCCAAAACAAGCTTTCACAGACGTGGCCACTGGCTCCCTGGGCCAGGGCCTCGGGGCCGCGTGCG
GGATGGCCTACACCGGCAAGTACTTCGACAAAGCCAGCTACCGAGTCTATTGCCTGCTGGGAGACGGAGAGCTGTCCGAA
GGCTCCGTGTGGGAGGCCATGGCCTTTGCCAGCTTCTACAAGCTGGACAACCTCGTCGCCATTCTTGATGTCAACCGCCT
GGGCCAGAGCGACCCTGCCCCTCTGCAGCACCAGTTGGACGTCTACCAGAAGCGCTGCGAGGCCTTTGGCTGGCACACCA
TCATCGTGGATGGACACAGCGTGGAGGAGCTGTGCAAGGCCTTTGGCCAGGCTAAGCACCAGCCCACAGCCATCATCGCC
AAGACCTTCAAAGGCCGCGGAATTACAGGGATAGAAGATAAGGAGTCCTGGCATGGGAAACCCCTCCCCAAAAACATGGC
CGATCAGGTCATCCAGGAAATCTACAGCCAGATCCAGAGCAAAAAGAAGATCCTGGCGACGCCCCCGCAGGAGGATGCCC
CCTCGGTGGACATCAGCAACATCCGCATGCCCACCCCGCCCAGCTACAAAGTCGGGGACAAGATAGCCACCCGCAAGGCC
TATGGGCAGGCCCTGGCCAAACTGGGCCACGCCAGTGACCGCATCATCGCCCTGGATGGGGACACCAAGAATTCCACCTT
CTCGGATCTCTTCAAAAAGGAGCACCCAGACCGCTTCATCGAGTGCTACATTGCCGAGCAGAACATGGTGAGCGTCGCTG
TGGGCTGTGCCACGCGCAACAGGACGGTACCCTTCTGTAGCTCTTTCGCCGCCTTCTTCACACGGGCCTTTGACCAGATC
CGCATGGCGGCTATCTCCGAGAGCAACATCAACGTGTGCGGCTCCCACTGCGGAGTGTCCATCGGGGAAGATGGGCCCTC
TCAGATGGCCCTGGAAGACTTGGCCATGTTCCGCTCCATCCCCATGTCAACTGTCTTTTACCCGAGTGACGCAGTCGCTA
CAGAGAAGGCAGTGGAATTAGCAGCCAATACAAAGGGCATCTGCTTCATCCGGACCAGCCGCCCGGAAAACGCCATCATC
TACAACAACAGTGAGGATTTCCAGGTTGGACAAGGCAAGGTGGTCCTGAAGAGCAAGGATGACCAGGTGACCGTGGTCGG
GGCTGGGGTGACCCTGCACGAGGCCTTGGCTGCCGCCGAGCTGCTAAAGAAAGAGAGGATCAGCATCCGCGTGGTGGACC
CCTTCACCATCAAGCCCCTGGACAGGAAGCTCATCCTGGACAGTGCCCGTGCCACCAAGGGCAGAATCCTCACCGTGGAG
GACCACTATTACGAAGGTGGCATAGGGGAGGCGGTGTCCACTGCAGTAGTAGGCGAGCCTGGTGTCACTGTCGCCCGCCT
GGCTGTGGGCCAGGTACCAAGAAGCGGGAAGCCGGCCGAGCTGCTGAGGATGTTCGGCATCGACAAGGACGCCATCGCGC
AAGCTGTGAGGGGCCTGGTGGCCAAGGCCTAG
ATGGAAGGCTACCACAAACCCGACCAGCAGAAGCTGCAGGCCCTGAAGGACACGGCCAACCGGCTGCGCATCAGCTCCAT
CCAGGCCACCACCGCGGCGGGCTCGGGCCACCCCACATCATGCTGCAGCGCGGCGGAGATCATGGCCGTACTCTTCTTCC
ACACCATGCGGTACAAGGCCCAGGACCCCCGGAACCCTCACAATGACCGCTTTATACTCTCCAAGGGCCACGCAGCTCCC
ATCCTGTATGCCGTCTGGGCTGAAGCTGGCTACCTGCCCGAGGCAGAGCTGCTGAACCTGAGGAAGATCAGCTCCGACCT
GGACGGGCACCCTGTCCCAAAACAAGCTTTCACAGACGTGGCCACTGGCTCCCTGGGCCAGGGCCTCGGGGCCGCGTGCG
GGATGGCCTACACCGGCAAGTACTTCGACAAAGCCAGCTACCGAGTCTATTGCCTGCTGGGAGACGGAGAGCTGTCCGAA
GGCTCCGTGTGGGAGGCCATGGCCTTTGCCAGCTTCTACAAGCTGGACAACCTCGTCGCCATTCTTGATGTCAACCGCCT
GGGCCAGAGCGACCCTGCCCCTCTGCAGCACCAGTTGGACGTCTACCAGAAGCGCTGCGAGGCCTTTGGCTGGCACACCA
TCATCGTGGATGGACACAGCGTGGAGGAGCTGTGCAAGGCCTTTGGCCAGGCTAAGCACCAGCCCACAGCCATCATCGCC
AAGACCTTCAAAGGCCGCGGAATTACAGGGATAGAAGATAAGGAGTCCTGGCATGGGAAACCCCTCCCCAAAAACATGGC
CGATCAGGTCATCCAGGAAATCTACAGCCAGATCCAGAGCAAAAAGAAGATCCTGGCGACGCCCCCGCAGGAGGATGCCC
CCTCGGTGGACATCAGCAACATCCGCATGCCCACCCCGCCCAGCTACAAAGTCGGGGACAAGATAGCCACCCGCAAGGCC
TATGGGCAGGCCCTGGCCAAACTGGGCCACGCCAGTGACCGCATCATCGCCCTGGATGGGGACACCAAGAATTCCACCTT
CTCGGATCTCTTCAAAAAGGAGCACCCAGACCGCTTCATCGAGTGCTACATTGCCGAGCAGAACATGGTGAGCGTCGCTG
TGGGCTGTGCCACGCGCAACAGGACGGTACCCTTCTGTAGCTCTTTCGCCGCCTTCTTCACACGGGCCTTTGACCAGATC
CGCATGGCGGCTATCTCCGAGAGCAACATCAACGTGTGCGGCTCCCACTGCGGAGTGTCCATCGGGGAAGATGGGCCCTC
TCAGATGGCCCTGGAAGACTTGGCCATGTTCCGCTCCATCCCCATGTCAACTGTCTTTTACCCGAGTGACGCAGTCGCTA
CAGAGAAGGCAGTGGAATTAGCAGCCAATACAAAGGGCATCTGCTTCATCCGGACCAGCCGCCCGGAAAACGCCATCATC
TACAACAACAGTGAGGATTTCCAGGTTGGACAAGGCAAGGTGGTCCTGAAGAGCAAGGATGACCAGGTGACCGTGGTCGG
GGCTGGGGTGACCCTGCACGAGGCCTTGGCTGCCGCCGAGCTGCTAAAGAAAGAGAGGATCAGCATCCGCGTGGTGGACC
CCTTCACCATCAAGCCCCTGGACAGGAAGCTCATCCTGGACAGTGCCCGTGCCACCAAGGGCAGAATCCTCACCGTGGAG
GACCACTATTACGAAGGTGGCATAGGGGAGGCGGTGTCCACTGCAGTAGTAGGCGAGCCTGGTGTCACTGTCGCCCGCCT
GGCTGTGGGCCAGGTACCAAGAAGCGGGAAGCCGGCCGAGCTGCTGAGGATGTTCGGCATCGACAAGGACGCCATCGCGC
AAGCTGTGAGGGGCCTGGTGGCCAAGGCCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 104 .21 RPM |
| SRP017611_kidney | 100 .14 RPM |
| SRP017611_brain | 107 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000003758 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000007253 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000000072 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000001392 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000163931 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005312 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000000943 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014433 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021957 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016911 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000009891 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015024 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000016283 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000016064 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000017349 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000021408 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012114 | ortholog_one2one | 1 retrogene | |
| Takifugu rubripes | ENSTRUG00000003009 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_62 | 65.57 | 92.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_319 | 53.75 | 61.96 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000015904 retrocopies