Parental gene:

SNRPA1, ENSOCUG00000017417

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:84703420..84716633(+)


>ENSOCUG00000017417
ATGGTGAAGCTGACAGCTGAGCTGATCGAGCAAGCGGTGCAGTACACTCACGACGTGCTGGACCGCGACGCTGAACATGC
AGGGTATAAAATTCCTGTCATTGAAAACCTGGGTGCTACCTTGGACCAGTTTGATGCTATCGATTTTTCCGACAATGAGA
TCAGGAAGCTGGATGGGTTTCCTCTGCTGAGAAGACTGAAAACGTTGTTGGTGAACAACAACAGGATATGCCGTATAGGT
GAGGGGCTTGATCAGGCTCTGCCCTGTCTCACAGAACTCATTCTCACCAACAACAGCCTTATGGAACTGGGTGACCTGGA
CCCCTTGGCCTCCCTCAGATCGCTGACGTACCTAAGTATTCTGCGGAATCCTGTAACAAACAAGAAGCATTACAGACTGT
ATGTCATTTACAAAGTTCCACAAGTCAGAGTACTGGATTTCCAGAAAGTAAAGCTAAAAGAGCGTCAGGAAGCAGAGAAA
ATGTTCAAGGGCAAACGGGGTGCACAGCTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTTAATCCAGGGGCTGGTTT
GCCGGCTGACAAAAAGAAAGGTGGGCCGTCTCCAGGGGATGTCGAGGCAATCAAGAATGCTATAGCCAACGCATCCACCC
TGGCCGAAGTGGAGAGGCTGAAAGGGCTGCTGCAGTCCGGGCAGATCCCTGGCAGAGAACGCAGACCAGGGCCCGCTGAT
GATGCTGAAGAAGAGATGGAGGAAGACACGGTCACAAACGGATCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 31 .07 RPM
SRP017611_kidney 24 .43 RPM
SRP017611_liver 13 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007128 ortholog_one2one 1 retrogene
retro_amel_850,
Bos taurus ENSBTAG00000013593 ortholog_one2one 1 retrogene
retro_btau_1453,
Canis familiaris ENSCAFG00000010564 ortholog_one2one 1 retrogene
retro_cfam_1208,
Echinops telfairi ENSETEG00000010019 ortholog_one2one 1 retrogene
retro_etel_1366,
Felis catus ENSFCAG00000018594 ortholog_one2one 1 retrogene
retro_fcat_322,
Homo sapiens ENSG00000131876 ortholog_one2one 2 retrogenes
retro_hsap_2148, retro_hsap_2601,
Loxodonta africana ENSLAFG00000012638 ortholog_one2one 1 retrogene
retro_lafr_1230,
Myotis lucifugus ENSMLUG00000014213 ortholog_one2one 1 retrogene
retro_mluc_2442,
Mustela putorius furo ENSMPUG00000010938 ortholog_one2one 1 retrogene
retro_mputfur_1139,
Pan troglodytes ENSPTRG00000007513 ortholog_one2one 1 retrogene
retro_ptro_1525,
Tupaia belangeri ENSTBEG00000001669 ortholog_one2one 2 retrogenes
retro_tbel_1772, retro_tbel_3447,
Tarsius syrichta ENSTSYG00000003965 ortholog_one2one 2 retrogenes
retro_tsyr_1229, retro_tsyr_1943,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_366 72.15 90.98
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2. retro_ocun_1248 86.77 74.12
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3. retro_ocun_1775 74.85 65.10
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Download FASTA sequences of all ENSOCUG00000017417 retrocopies