RetrogeneDB ID: | retro_ocun_1775 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018885:231462..231956(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPA1 | ||
Ensembl ID: | ENSOCUG00000017417 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152] |
Percent Identity: | 74.85 % |
Parental protein coverage: | 65.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LTELILTNNSLMELGDLDPLASLRSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAE |
LTEL.LTNNSL.ELGD.DPL.SLRSLTYLSILRNP.TN..H.RL.VIY..PQV.VLDFQK.KLKERQEAE | |
Retrocopy | LTELTLTNNSLVELGDQDPLTSLRSLTYLSILRNPETNRRHCRLCVIYRAPQVKVLDFQKEKLKERQEAE |
Parental | KMFKGKRGAQLAKDIARRSKTFNPGAG-LPADKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQ |
KMFK.KRGAQLAKDIARRS.TFN.GAG.LP.DKK..GPSPGD..AI..AI..AS.LA..E.LK...QS.Q | |
Retrocopy | KMFKSKRGAQLAKDIARRSDTFNLGAG<LPTDKKEDGPSPGDSVAIMSAIVHASSLAGAEGLKEQVQSSQ |
Parental | IPGRERRPGPADDAEEEMEEDTVTNGS |
IP.RE.R.GP...AEEEM.EDTV.NGS | |
Retrocopy | IPSREPRSGPTREAEEEM-EDTVVNGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .43 RPM |
SRP017611_liver | 0 .00 RPM | 13 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007128 | 1 retrocopy | |
Bos taurus | ENSBTAG00000013593 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010564 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010019 | 1 retrocopy | |
Felis catus | ENSFCAG00000018594 | 1 retrocopy | |
Homo sapiens | ENSG00000131876 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000012638 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014213 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010938 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017417 | 3 retrocopies |
retro_ocun_1248, retro_ocun_1775 , retro_ocun_366,
|
Pan troglodytes | ENSPTRG00000007513 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001669 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000003965 | 2 retrocopies |