Parental gene:

SFT2D1, ENSOPRG00000003408

Aliases:None
Description:SFT2 domain containing 1 [Source:HGNC Symbol;Acc:21102]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3593:121939..135809(-)


>ENSOPRG00000003408
ATGGACAAGCTGCGGCGGGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACCGCGCAGGTCCTGGACGCCTCATC
GCTCAGCTTTAGCACCAGAGTGAAGTGCTTTGTCATCTGCTTCATAGCTGGCGTTTTCTTCTCTCTCCTTGGAACTGGCC
TGCTGTGGCTGCCCGGGGGCGTGAAGCTCTTCGCCGTGTTTTACACCCTTGGGAACCTCGCTGCCTTGGCCAGCACCTGC
TTTCTGATGGGACCCGTGAAGCAACTGAAGAAAATGTTTGAACCCACAAGATTGCTTGCCACCGTTGTTATGCTTCTGTG
TCTCTTCTGTACGCTGTGCGCTGTCTTCTGGTGGCACAAGAAGGGGTTGGCCTTATTATTCTGCATACTGCAGTTCCTGT
CAATGACCTGGTACAGTCTGTCCTACATCCCCTATGCAAGGGACGCGGTGATGAAGTGCTGTTCTTCTTTGCTGAGCTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009311 ortholog_one2one 3 retrogenes
retro_amel_1244, retro_amel_1452, retro_amel_374,
Bos taurus ENSBTAG00000002993 ortholog_one2many 5 retrogenes
retro_btau_1458, retro_btau_1460, retro_btau_31, retro_btau_546, retro_btau_900,
Canis familiaris ENSCAFG00000000811 ortholog_one2one 2 retrogenes
retro_cfam_283, retro_cfam_551,
Equus caballus ENSECAG00000019479 ortholog_one2one 1 retrogene
retro_ecab_1029,
Mus musculus ENSMUSG00000073468 ortholog_one2many 1 retrogene
retro_mmus_164,
Oryctolagus cuniculus ENSOCUG00000001200 ortholog_one2one 1 retrogene
retro_ocun_1492,
Otolemur garnettii ENSOGAG00000006302 ortholog_one2one 1 retrogene
retro_ogar_1601,
Pongo abelii ENSPPYG00000017165 ortholog_one2many 1 retrogene
retro_pabe_181,
Pteropus vampyrus ENSPVAG00000012673 ortholog_one2one 3 retrogenes
retro_pvam_1340, retro_pvam_465, retro_pvam_559,
Sus scrofa ENSSSCG00000004020 ortholog_one2one 1 retrogene
retro_sscr_751,
Tupaia belangeri ENSTBEG00000000045 ortholog_one2one 2 retrogenes
retro_tbel_3277, retro_tbel_747,
Tursiops truncatus ENSTTRG00000004447 ortholog_one2one 2 retrogenes
retro_ttru_1353, retro_ttru_624,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_37 63.86 51.57
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2. retro_opri_809 63.86 51.57
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Download FASTA sequences of all ENSOPRG00000003408 retrocopies