Parental gene:

RPS19, ENSPPYG00000010029

Aliases:None
Description:40S ribosomal protein S19 [Source:UniProtKB/Swiss-Prot;Acc:Q5R8M9]
Organism:Orangutan (Pongo abelii)
Coordinates:19:43123910..43135546(+)


>ENSPPYG00000010029
ATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAA
GCTGAAAGTCCCCGAATGGGTGGACACCGTCAAGCTGGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGGTTCT
ACACGCGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGG
GGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTAGCCCGCCGGGTCCTCCAAGCCCT
GGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGCGGCCGCAAACTGACACCTCAGGGACAGAGAGATCTGGACAGAA
TCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 53 .19 RPM
SRP007412_cerebellum 41 .10 RPM
SRP007412_heart 53 .31 RPM
SRP007412_kidney 148 .93 RPM
SRP007412_liver 190 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004456 ortholog_one2one 4 retrogenes
retro_amel_1418, retro_amel_1816, retro_amel_193, retro_amel_550,
Canis familiaris ENSCAFG00000028485 ortholog_one2one 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Callithrix jacchus ENSCJAG00000020243 possible_ortholog 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Cavia porcellus ENSCPOG00000025140 ortholog_one2one 1 retrogene
retro_cpor_1018,
Felis catus ENSFCAG00000008125 ortholog_one2one 3 retrogenes
retro_fcat_2026, retro_fcat_543, retro_fcat_816,
Gorilla gorilla ENSGGOG00000015279 ortholog_one2one 4 retrogenes
retro_ggor_1085, retro_ggor_1503, retro_ggor_2458, retro_ggor_578,
Myotis lucifugus ENSMLUG00000006143 ortholog_one2one 5 retrogenes
retro_mluc_1316, retro_mluc_2247, retro_mluc_2426, retro_mluc_980, retro_mluc_987,
Pan troglodytes ENSPTRG00000011037 ortholog_one2one 6 retrogenes
retro_ptro_1392, retro_ptro_2269, retro_ptro_2467, retro_ptro_485, retro_ptro_612, retro_ptro_961,
Pteropus vampyrus ENSPVAG00000008980 ortholog_one2one 4 retrogenes
retro_pvam_1032, retro_pvam_1171, retro_pvam_137, retro_pvam_895,
Rattus norvegicus ENSRNOG00000048199 possible_ortholog 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sarcophilus harrisii ENSSHAG00000006831 ortholog_one2one 1 retrogene
retro_shar_731,
Sus scrofa ENSSSCG00000003042 ortholog_one2one 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,
Tupaia belangeri ENSTBEG00000003457 ortholog_one2one 21 retrogenes
retro_tbel_103, retro_tbel_1275, retro_tbel_1575, retro_tbel_1748, retro_tbel_1803, retro_tbel_1888, retro_tbel_2104, retro_tbel_2521, retro_tbel_2554, retro_tbel_2971, retro_tbel_3008, retro_tbel_3339, retro_tbel_3388, retro_tbel_345, retro_tbel_3607, retro_tbel_3860, retro_tbel_4425, retro_tbel_673, retro_tbel_875, retro_tbel_913, retro_tbel_945,
Tursiops truncatus ENSTTRG00000008278 ortholog_one2one 5 retrogenes
retro_ttru_1308, retro_ttru_1608, retro_ttru_1686, retro_ttru_336, retro_ttru_593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_430 87.85 73.79
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2. retro_pabe_585 83.19 77.93
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3. retro_pabe_586 84.07 77.93
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4. retro_pabe_1158 93.10 100.00
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5. retro_pabe_1754 86.92 73.79
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6. retro_pabe_1781 91.78 100.00
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7. retro_pabe_2636 81.16 94.48
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Download FASTA sequences of all ENSPPYG00000010029 retrocopies