RetrogeneDB ID: | retro_tbel_345 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1808:112691..113075(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS19 | ||
Ensembl ID: | ENSTBEG00000003457 | ||
Aliases: | None | ||
Description: | ribosomal protein S19 [Source:HGNC Symbol;Acc:10402] |
Percent Identity: | 67.97 % |
Parental protein coverage: | 86.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGG---RQR |
L.AFLK.S.KLK.P.WVD..KLAKHKELAP.DENW.YTRAASTA.HLYL....G........GG...... | |
Retrocopy | LTAFLKVSRKLKAPQWVDAAKLAKHKELAPCDENWLYTRAASTAWHLYLWVVLGWLHDQDLWGGGRWEMQ |
Parental | NGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAN |
..VMPSHFS..SKSVA..V.QALE.LKMVEKDQ..G.KLTP.GQRDLDRIA.QVAAAN | |
Retrocopy | SNVMPSHFS*VSKSVAHQVFQALERLKMVEKDQNMGHKLTPLGQRDLDRIARQVAAAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |