Parental gene:

SNRNP27, ENSPPYG00000012332

Aliases:None
Description:small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Source:HGNC Symbol;Acc:30240]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:40897340..40907658(-)


>ENSPPYG00000012332
ATGGGTCGCAGTCGCAGCCGCTCTCCACGGAGGGAGCGTAGGCGTTCCCGGTCCACATCCCGGGAGAGAGAACGCAGGCG
CCGAGAAAGGTCCAGGTCTCGGGAGAGAGATCGGAGAAGGAGCCGCTCGCGATCCCCGCACCGAAGACGCTCCCGATCTC
CAAGACGACATAGATCCACATCTCCTTCCCCTTCTCGACTGAAAGAAAGAAGAGATGAGGAAAAGAAAGAAACAAAAGAA
ACAAAGAGCAAAGAACGGCAGATTACTGAGGAAGACTTAGAGGGCAAAACAGAGGAAGAAATAGAAATGATGAAGTTAAT
GGGATTTGCCTCCTTTGACTCCACAAAAGGTAAGAAGGTGGATGGCTCTGTAAATGCCTATGCCATAAATGTCTCTCAGA
AGAGGAAGTACAGGCAGTACATGAATCGAAAGTGGATTCAACAGACCTTTGGATTTCATTGCATGAGATTGAAGTGTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .42 RPM
SRP007412_cerebellum 8 .15 RPM
SRP007412_heart 5 .63 RPM
SRP007412_kidney 5 .70 RPM
SRP007412_liver 5 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000037746 ortholog_one2one 4 retrogenes
retro_btau_1352, retro_btau_375, retro_btau_514, retro_btau_515,
Choloepus hoffmanni ENSCHOG00000003042 ortholog_one2one 1 retrogene
retro_chof_2589,
Echinops telfairi ENSETEG00000017344 ortholog_one2one 1 retrogene
retro_etel_655,
Homo sapiens ENSG00000124380 ortholog_one2one 1 retrogene
retro_hsap_3387,
Mus musculus ENSMUSG00000001158 ortholog_one2one 2 retrogenes
retro_mmus_1977, retro_mmus_2105,
Oryctolagus cuniculus ENSOCUG00000022967 ortholog_one2one 1 retrogene
retro_ocun_1281,
Pan troglodytes ENSPTRG00000012022 ortholog_one2one 1 retrogene
retro_ptro_2300,
Sus scrofa ENSSSCG00000025674 ortholog_one2one 1 retrogene
retro_sscr_285,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1990 68.75 69.18
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2. retro_pabe_2782 83.12 100.00
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Download FASTA sequences of all ENSPPYG00000012332 retrocopies