Parental gene:

HSP90AB1, ENSPPYG00000016655

Aliases:None
Description:heat shock protein HSP 90-beta [Source:RefSeq peptide;Acc:NP_001126444]
Organism:Orangutan (Pongo abelii)
Coordinates:6:44195130..44203519(+)


>ENSPPYG00000016655
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTCCCT
CATCATCAATACCTTCTATTCCAACAAGGAGATTTTCCTTCGGGAGTTGATCTCTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAGAGCCTGACAGACCCTTCGAAGTTGGACAGTGGTAAAGAACTGAAAATTGACATCATCCCCAACCCTCAG
GAACGTACCCTGACTTTGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAA
GTCTGGTACTAAAGCATTCATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTTGGCTTTT
ATTCTGCCTACCTGGTAGCAGAGAAAGTGGTTGTGATCACAAAGCACAATGATGATGAACAGTATGCTTGGGAGTCTTCT
GCTGGAGGTTCCTTCACTGTGCGTGCTGACCATGGTGAGCCCATTGGCAGGGGTACCAAAGTGATCCTCCATCTTAAAGA
AGATCAGACAGAGTACTTAGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCATTCTCAGTTCATAGGCTATCCCATCA
CCCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAA
GATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGCGGTAAGGATAAGAAGAA
GAAAACTAAGAAGATCAAAGAGAAATACATTGATCAGGAAGAACTAAACAAGACCAAGCCTATTTGGACCAGAAACCCTG
ATGACATCACCCAAGAGGAGTATGGAGAATTCTACAAGAGCCTCACCAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTTTCTGTAGAAGGTCAGTTGGAATTTAGGGCATTGCTATTCATTCCTCGTCGGGCTCCCTTTGACCTTTTTGAGAACAA
GAAGAAAAAGAACAACATCAAACTCTATGTCCGCCGTGTGTTCATCATGGACAGCTGTGATGAATTGATACCAGAGTATC
TCAATTTTATCCGTGGTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAAGTCATTCGCAAAAACATTGTTAAGAAGTGCCTTGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAATTACAA
GAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGAATCCATGAAGACTCCACTAACCGCCGCCGCCTGTCTGAGC
TGCTGCGCTATCATACCTCCCAGTCTGGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGGAGACACAG
AAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTGGTATATATGACCGAGCCCATTGATGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAGAGCCTGG
TTTCAGTTACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAAGAGGAGAAGAAGAAGATGGAAGAGAGTAAGGCAAAGTTT
GAGAACCTCTGCAAGCTCATGAAAGAAATCTTAGATAAGAAGGTTGAGAAGGTGACCATCTCCAATAGACTTGTGTCTTC
ACCTTGCTGCATTGTGACCAGCACCTACGGCTGGACAGCCAATATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACA
ACTCCACCATGGGCTATATGATGGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAG
AAGGCTGAGGCCGACAAGAATGATAAGGCAGTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGTTATCTTCCGG
CTTTTCCCTCGAGGATCCCCAGACCCACTCGAACCGCATCTACCGCATGATCAAGCTAGGTCTAGGTATTGATGAAGATG
AAGTGGCAGCAGAGGAACCCAGTGCTGCAGTTCCTGATGAGATCCCCCCTCTTGAGGGCGATGAGGATGCGTCTCGCATG
GAAGAAGTCGATTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1001 .09 RPM
SRP007412_cerebellum 799 .65 RPM
SRP007412_heart 514 .20 RPM
SRP007412_kidney 545 .93 RPM
SRP007412_liver 429 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001981 possible_ortholog 4 retrogenes
retro_cfam_1108, retro_cfam_411, retro_cfam_562, retro_cfam_881,
Felis catus ENSFCAG00000009764 possible_ortholog 1 retrogene
retro_fcat_1177,
Gorilla gorilla ENSGGOG00000008889 ortholog_one2one 2 retrogenes
retro_ggor_1011, retro_ggor_701,
Macropus eugenii ENSMEUG00000013735 ortholog_one2many 1 retrogene
retro_meug_1896,
Myotis lucifugus ENSMLUG00000005239 possible_ortholog 2 retrogenes
retro_mluc_1604, retro_mluc_865,
Mus musculus ENSMUSG00000023944 possible_ortholog 3 retrogenes
retro_mmus_1916, retro_mmus_3528, retro_mmus_856,
Otolemur garnettii ENSOGAG00000011961 ortholog_one2one 1 retrogene
retro_ogar_2574,
Pongo abelii ENSPPYG00000006153 within_species_paralog 1 retrogene
retro_pabe_1760,
Pan troglodytes ENSPTRG00000018217 ortholog_one2one 4 retrogenes
retro_ptro_1850, retro_ptro_1968, retro_ptro_2003, retro_ptro_880,
Tupaia belangeri ENSTBEG00000014873 ortholog_one2one 1 retrogene
retro_tbel_1428,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_415 68.94 64.36
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2. retro_pabe_2425 88.28 77.35
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Download FASTA sequences of all ENSPPYG00000016655 retrocopies