Parental gene:

HSP90AB1, ENSPTRG00000018217

Aliases:None
Description:heat shock protein 90kDa alpha (cytosolic), class B member 1 [Source:HGNC Symbol;Acc:5258]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:44900227..44907374(+)


>ENSPTRG00000018217
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTCCCT
CATCATCAATACCTTCTATTCCAACAAGGAGATTTTCCTTCGGGAGTTGATCTCTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAGAGCCTGACAGACCCTTCGAAGTTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAATCCTCAG
GAACGTACCCTGACTTTGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAA
GTCTGGTACTAAAGCATTCATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTTGGCTTTT
ATTCTGCCTACTTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCACAACGATGATGAACAGTATGCTTGGGAGTCTTCT
GCTGGAGGTTCCTTCACTGTGCGTGCTGACCATGGTGAGCCAATTGGCAGGGGTACCAAAGTGATCCTCCATCTTAAAGA
AGATCAGACAGAGTACTTAGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCATTCTCAGTTCATAGGCTATCCCATCA
CCCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAA
GATAAAGATGATGAAGAAAAGCCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGCGGTAAGGATAAGAAGAA
GAAAACTAAGAAGATCAAAGAGAAATACATTGATCAGGAAGAGCTAAACAAGACCAAGCCTATTTGGACCAGAAACCCTG
ATGACATCACCCAAGAGGAGTATGGAGAATTCTACAAGAGCCTCACTAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTTTCTGTAGAAGGTCAGTTGGAATTCAGGGCATTGCTATTTATTCCTCGTCGGGCTCCCTTTGACCTTTTTGAGAACAA
GAAGAAAAAGAACAACATCAAACTCTATGTCCGCCGTGTGTTCATCATGGACAGCTGTGATGAGTTGATACCAGAGTATC
TCAATTTTATCCGTGGTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAAGTCATTCGCAAAAACATTGTTAAGAAGTGCCTTGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAATTACAA
GAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGAATCCACGAAGACTCCACTAACCGCCGCCGCCTGTCTGAGC
TGCTGCGCTATCATACCTCCCAGTCTGGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGGAGACACAG
AAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGACGGGAAGAGCCTGG
TCTCAGTTACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAGAAGAAGATGGAAGAGAGCAAGGCAAAGTTT
GAGAACCTCTGCAAGCTCATGAAAGAAATCTTAGATAAGAAGGTCGAGAAGGTGACAATCTCCAATAGACTTGTGTCTTC
ACCTTGCTGCATTGTGACCAGCACCTACGGCTGGACAGCCAATATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACA
ACTCCACCATGGGCTATATGATGGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAG
AAGGCTGAGGCCGACAAGAATGATAAGGCAGTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGCTATCTTCTGG
CTTTTCCCTTGAGGATCCCCAGACCCACTCCAACCGCATCTACCGCATGATCAAGCTAGGTCTAGGTATTGATGAAGATG
AAGTGGCAGCAGAGGAACCCAGTGCTGCAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATGCATCTCGCATG
GAAGAAGTCGATTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 760 .70 RPM
SRP007412_cerebellum 860 .72 RPM
SRP007412_heart 769 .78 RPM
SRP007412_kidney 589 .46 RPM
SRP007412_liver 666 .44 RPM
SRP007412_testis 413 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000008889 ortholog_one2one 2 retrogenes
retro_ggor_1011, retro_ggor_701,
Macropus eugenii ENSMEUG00000013735 ortholog_one2one 1 retrogene
retro_meug_1896,
Myotis lucifugus ENSMLUG00000005239 possible_ortholog 2 retrogenes
retro_mluc_1604, retro_mluc_865,
Otolemur garnettii ENSOGAG00000011961 ortholog_one2one 1 retrogene
retro_ogar_2574,
Pongo abelii ENSPPYG00000016655 ortholog_one2one 2 retrogenes
retro_pabe_2425, retro_pabe_415,
Pan troglodytes ENSPTRG00000005372 within_species_paralog 1 retrogene
retro_ptro_170,
Pan troglodytes ENSPTRG00000006736 within_species_paralog 2 retrogenes
retro_ptro_207, retro_ptro_596,
Tupaia belangeri ENSTBEG00000014873 ortholog_one2one 1 retrogene
retro_tbel_1428,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_880 79.04 91.57
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2. retro_ptro_1850 68.84 54.42
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3. retro_ptro_1968 86.08 64.23
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4. retro_ptro_2003 89.94 100.00
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Download FASTA sequences of all ENSPTRG00000018217 retrocopies