Parental gene:

CAPZA2, ENSPPYG00000017933

Aliases:None
Description:F-actin-capping protein subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R4P6]
Organism:Orangutan (Pongo abelii)
Coordinates:7:113392522..113450629(+)


>ENSPPYG00000017933
ATGGCGGATCTGGAGGAGCAGTTGTCTGATGAAGAGAAGGTGCGTATAGCAGCAAAATTCATCATTCATGCCCCTCCTGG
AGAATTTAATGAGGTTTTTAATGATGTTCGGTTACTGCTTAATAATGACAATCTTCTCAGGGAAGGAGCAGCCCATGCAT
TTGCACAGTATAACTTGGACCAGTTTACTCCAGTAAAAATTGAAGGTTATGAAGATCAGGTATTGATAACAGAACATGGC
GACTTGGGAAATGGAAAGTTTTTGGATCCAAAGAACAGAATCTGTTTTAAATTTGATCACTTAAGGAAGGAGGCAACTGA
TCCAAGACCCTGTGAAGTAGAAAATGCAGTTGAATCATGGAGAACTTCAGTAGAAACTGCTCTGAGAGCTTACGTAAAAG
AACATTACCCAAATGGAGTCTGCACTGTGTATGGCAAAAAAATAGATGGACAGCAAACCATTATTGCATGCATAGAAAGC
CATCAGTTCCAAGCAAAAAACTTTTGGAATGGTCGTTGGAGGTCAGAATGGAAGTTTACAATTACTCCTTCAACCACTCA
AGTGGTTGGCATCTTGAAAATTCAGGTTCATTATTATGAAGATGGTAATGTTCAGCTAGTCAGTCATAAAGATATACAAG
ATTCCCTAACAGTGTCTAATGAAGTGCAAACAGCAAAAGAATTTATAAAGATTGTAGAAGCTGCAGAAAATGAATACCAG
ACTGCCATCAGTGAGAATTATCAGACAATGTCGGACACTACTTTCAAAGCCTTACGTCGACAGTTGCCAGTTACACGCAC
TAAGATTGATTGGAACAAGATCCTTAGCTACAAGATTGGCAAAGAGATGCAGAATGCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 44 .95 RPM
SRP007412_cerebellum 40 .86 RPM
SRP007412_heart 61 .74 RPM
SRP007412_kidney 41 .04 RPM
SRP007412_liver 27 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004925 ortholog_one2one 2 retrogenes
retro_chof_2296, retro_chof_680,
Cavia porcellus ENSCPOG00000007677 ortholog_one2one 1 retrogene
retro_cpor_205,
Dasypus novemcinctus ENSDNOG00000005771 ortholog_one2one 1 retrogene
retro_dnov_1892,
Dipodomys ordii ENSDORG00000016226 ortholog_one2one 1 retrogene
retro_dord_266,
Erinaceus europaeus ENSEEUG00000009063 ortholog_one2one 5 retrogenes
retro_eeur_142, retro_eeur_167, retro_eeur_351, retro_eeur_365, retro_eeur_482,
Echinops telfairi ENSETEG00000019711 ortholog_one2one 3 retrogenes
retro_etel_1516, retro_etel_2020, retro_etel_442,
Gorilla gorilla ENSGGOG00000012158 ortholog_one2one 1 retrogene
retro_ggor_1774,
Microcebus murinus ENSMICG00000000707 ortholog_one2one 1 retrogene
retro_mmur_1224,
Myotis lucifugus ENSMLUG00000007910 ortholog_one2one 1 retrogene
retro_mluc_2595,
Oryctolagus cuniculus ENSOCUG00000003591 ortholog_one2one 2 retrogenes
retro_ocun_1531, retro_ocun_873,
Pongo abelii ENSPPYG00000001021 within_species_paralog 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Sus scrofa ENSSSCG00000026942 ortholog_one2many 2 retrogenes
retro_sscr_1127, retro_sscr_600,
Ictidomys tridecemlineatus ENSSTOG00000024828 ortholog_one2one 1 retrogene
retro_itri_1561,
Tupaia belangeri ENSTBEG00000012657 ortholog_one2one 2 retrogenes
retro_tbel_2004, retro_tbel_2228,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1321 87.14 83.92
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Download FASTA sequences of all ENSPPYG00000017933 retrocopies