Parental gene:

TRAM1, ENSPPYG00000018660

Aliases:None
Description:translocating chain-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001126237]
Organism:Orangutan (Pongo abelii)
Coordinates:8:72923776..72957656(-)


>ENSPPYG00000018660
ATGGCGATTCGCAAGAAAAGCACCAAGAGCCCCCCGGTGCTGAGCCACGAATTCGTCCTGCAGAATCACGCGGACATCGT
CTCCTGTGTGGCGATGGTCTTCCTGCTGGGGCTCATGTTTGAGATAAGGGCAAAAGCTTCTATCATTTTTGTTACTCTTC
AGTACAACGTCACCCTCCCCGCAACAGAAGAACAAGCTACTGAATCAGCGTCCCTTTATTACTATGGTATCAAAGATTTG
GCTACGGTTTTCTTCTACATGCTAGTGGCGATAATTATTCATGCCGTAATTCAAGAGTATATGTTGGATAAAATTAACAG
GCGAATGCACTTCTCCAAAACGAAACACAGCAAGTTTAATGAATCTGGTCAGCTTAGTGCGTTCTACCTTTTTGCCTGTG
TTTGGGGCACATTCATTCTCATCTCTGAAAACTACATCTCAGACCCAACTATCTTATGGAGGGCTTATCCCCATAACCTG
ATGACATTTCAAATGAAGTTTTTCTACATATCACAGCTGGCTTACTGGCTTCATGCTTTTCCTGAACTCTACTTCCAGAA
AACCAAAAAAGAAGATATTCCTCGTCAGCTTGTCTACATTGGTCTTTACCTCTTCCACATTGCTGGAGCTTACCTTTTGA
ACTTGAATCATCTAGGACTTGTTCTTCTGGTGCTACATTATTTTGTTGAATTTCTTTTCCATATTTCCCGCCTGTTTTAT
TTTAGCAATGAAAAGTATCAGAAAGGATTTTCTCTGTGGGCAGTTCTTTTTGTTTTGGGAAGACTTCTGACTTTAATTCT
TTCAGTACTGACTGTTGGTTTTGGCCTTGCAAGAGCAGAGAATCAGAAGCTGGATTTCAGTACGGGAAACTTCAATGTGT
TGGCTGTTAGAATCGCTGTTCTGGCATCCATTTGCATTACTCAAGCTTTCATGATGTGGAAGTTCATTAATTTTCAGCTT
CGGAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAA
AAAAGGAACAGAAAATGGTGTGAATGGAACATTAACTTCAAATGTAGCAGACTCTCCCCGGAATAAAAAAGAGAAATCTT
CATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .07 RPM
SRP007412_cerebellum 12 .89 RPM
SRP007412_heart 18 .72 RPM
SRP007412_kidney 47 .80 RPM
SRP007412_liver 61 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006325 ortholog_one2one 1 retrogene
retro_amel_78,
Bos taurus ENSBTAG00000007562 ortholog_one2one 1 retrogene
retro_btau_24,
Canis familiaris ENSCAFG00000007866 ortholog_one2one 1 retrogene
retro_cfam_15,
Callithrix jacchus ENSCJAG00000007893 ortholog_one2one 1 retrogene
retro_cjac_168,
Dasypus novemcinctus ENSDNOG00000009296 ortholog_one2one 2 retrogenes
retro_dnov_27, retro_dnov_906,
Dipodomys ordii ENSDORG00000001901 ortholog_one2one 1 retrogene
retro_dord_27,
Equus caballus ENSECAG00000018378 ortholog_one2one 1 retrogene
retro_ecab_506,
Echinops telfairi ENSETEG00000018447 ortholog_one2one 1 retrogene
retro_etel_674,
Felis catus ENSFCAG00000028775 ortholog_one2one 1 retrogene
retro_fcat_136,
Homo sapiens ENSG00000067167 ortholog_one2one 1 retrogene
retro_hsap_51,
Loxodonta africana ENSLAFG00000011625 ortholog_one2one 1 retrogene
retro_lafr_9,
Macaca mulatta ENSMMUG00000001516 ortholog_one2one 1 retrogene
retro_mmul_235,
Monodelphis domestica ENSMODG00000007316 possible_ortholog 1 retrogene
retro_mdom_308,
Mustela putorius furo ENSMPUG00000010616 ortholog_one2one 1 retrogene
retro_mputfur_558,
Mus musculus ENSMUSG00000025935 ortholog_one2one 1 retrogene
retro_mmus_117,
Nomascus leucogenys ENSNLEG00000011376 ortholog_one2one 1 retrogene
retro_nleu_73,
Oryctolagus cuniculus ENSOCUG00000008734 ortholog_one2one 1 retrogene
retro_ocun_52,
Otolemur garnettii ENSOGAG00000006379 ortholog_one2one 1 retrogene
retro_ogar_2932,
Pan troglodytes ENSPTRG00000020334 ortholog_one2one 1 retrogene
retro_ptro_2081,
Rattus norvegicus ENSRNOG00000007892 ortholog_one2one 1 retrogene
retro_rnor_287,
Sus scrofa ENSSSCG00000006193 ortholog_one2one 1 retrogene
retro_sscr_980,
Ictidomys tridecemlineatus ENSSTOG00000005537 ortholog_one2one 1 retrogene
retro_itri_38,
Tarsius syrichta ENSTSYG00000013887 ortholog_one2one 1 retrogene
retro_tsyr_24,
Tursiops truncatus ENSTTRG00000000328 ortholog_one2one 1 retrogene
retro_ttru_24,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_169 71.12 100.00
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Download FASTA sequences of all ENSPPYG00000018660 retrocopies