Parental gene:

CHMP1B, ENSPPYG00000020505

Aliases:None
Description:charged multivesicular body protein 1B [Source:HGNC Symbol;Acc:24287]
Organism:Orangutan (Pongo abelii)
Coordinates:X:78105259..78141825(-)


>ENSPPYG00000020505
TTTTCAGAGTTATTTTTGAAGGCTGCAAAAGAACTTAATAGGAATGCCAAGAAATGTGATAAAGAAGAAAAGGCTGAAAA
GGCCAAGACTAAAAGTTTAAAACAGGCTATTCAGAAAGGCAATAAGGAAGCTGCAGGAATACATGCTGAAAATGCAATCC
ACCAGAAAAAGCAAGCAATTGATTTCTTAAGAATGAGTGCTAGAGTTGATGCTGTGGCAGTCAGAGTTCAAAATGCAGTA
ACAATGGTCAGGGTAAGACTGAAAAGTCAAAGAAGCATAGTTAAGTCTGTGGGTGCTTCATTGAGGAGTAGAACCTTGAA
AAAAACTTCTGCCTTGATGAACAAATTCAAACACCAGTTTGAAACACTGGATATTCAAACACAACAAATGGAAGATAAAA
TGAGTAGCTCTACAACCCTAACAACACCACAAAATGATGTCAACCAAATGGATATGCTGCTTCAGGAAATGGCAGATGAA
GCTAGCCTTGATCTCAATATGGAACTACCACAGGGTCAGATGGATTCTCTTGGCACAAGTGTTGCTTCCATGGAACAGGA
TAAACTATCAAGACTTGCTCTTCTCCATGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .17 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .06 RPM
SRP007412_kidney 0 .46 RPM
SRP007412_liver 0 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000026660 ortholog_one2one 1 retrogene
retro_cpor_1434,
Equus caballus ENSECAG00000018625 ortholog_one2one 1 retrogene
retro_ecab_991,
Gorilla gorilla ENSGGOG00000025604 ortholog_one2one 1 retrogene
retro_ggor_1368,
Loxodonta africana ENSLAFG00000026457 ortholog_one2one 2 retrogenes
retro_lafr_214, retro_lafr_826,
Macropus eugenii ENSMEUG00000015250 ortholog_one2one 2 retrogenes
retro_meug_1196, retro_meug_205,
Myotis lucifugus ENSMLUG00000024811 ortholog_one2one 3 retrogenes
retro_mluc_1161, retro_mluc_1344, retro_mluc_673,
Monodelphis domestica ENSMODG00000004273 ortholog_one2many 2 retrogenes
retro_mdom_1444, retro_mdom_154,
Mus musculus ENSMUSG00000031242 ortholog_one2one 1 retrogene
retro_mmus_1735,
Ochotona princeps ENSOPRG00000018556 ortholog_one2one 1 retrogene
retro_opri_577,
Pongo abelii ENSPPYG00000007667 within_species_paralog 1 retrogene
retro_pabe_344,
Pteropus vampyrus ENSPVAG00000001416 ortholog_one2one 2 retrogenes
retro_pvam_208, retro_pvam_59,
Rattus norvegicus ENSRNOG00000002323 ortholog_one2one 2 retrogenes
retro_rnor_1361, retro_rnor_623,
Sarcophilus harrisii ENSSHAG00000016903 ortholog_one2one 2 retrogenes
retro_shar_776, retro_shar_778,
Tarsius syrichta ENSTSYG00000011727 ortholog_one2one 1 retrogene
retro_tsyr_1611,
Tursiops truncatus ENSTTRG00000008066 ortholog_one2one 2 retrogenes
retro_ttru_1002, retro_ttru_235,
Vicugna pacos ENSVPAG00000000854 ortholog_one2one 2 retrogenes
retro_vpac_112, retro_vpac_422,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1581 72.84 81.73
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Download FASTA sequences of all ENSPPYG00000020505 retrocopies