Parental gene:

DEPDC1, ENSPTRG00000000847

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:69099756..69119974(-)


>ENSPTRG00000000847
ATGGAGAGTCAGGGTGTGCCTCCCGGGCCTTATCGGGCCACCAAGCTGTGGAATGAAGTTACCACATCTTTTCGAGCAGG
AATGCCTCTAAGAAAACACAGACAACACTTTAAAAAATATGGCAATTGTTTCACAGCAGGAGAAGCAGTGGATTGGCTTT
ATGACCTATTAAGAAATAATAGCAATTTTGGTCCTGAAGTTACAAGGCAACAGACTATCCAACTGTTGAGGAAATTTCTT
AAGAATCATGTAATTGAAGATATCAAAGGGAGGTGGGGATCAGAAAATGTTGATGATAACAACCAGCTCTTCAGATTTCC
TGCAACTTCGCCACTTAAAACTCTACCACGAAGGTATCCAGAATTGAGAAAAAACAACATAGAGAACTTTTCCAAAGATA
AAGATAGCATTTTTAAATTACGAAACTTATCTCGTAGAACTCCTAAAAGGCATGGATTACATTTATCTCAGGAAAATGGC
GAGAAAATAAAGCATGAAATAATCAATGAAGATCAAGAAAATGCAATTGATAATAGAGAACTAAGCCAGGAAGATGTTGA
AGAAGTTTGGAGATATGTTATTCTGATCTACCTGCAAACCATTTTAGGTGTGCCATCCCTAGAAGAAGTCATAAATCCAA
AACAAGTAATTCCCCAATATATAATGTACAACATGGCCAATACAAGTAAACGTGGAGTAGTTATACTACAAAACAAATCA
GATGACCTCCCTCACTGGGTATTATCTGCCATGAAGTGCCTAGCAAATTGGCCAAGAAGCAATGATATGAATAATCCAAC
TTATGTTGGATTTGAACGAGATGTATTCAGAACAATCGCAGATTATTTTCTAGATCTCCCTGAACCTCTACTTACTTTTG
AATATTACGAATTATTTGTAAACATTTTGGTTGTTTGTGGCTACATCACAGTTTCAGATAGATCCAGTGGGATACATAAA
ATTCAAGATGATCCACAGTCTTCAAAATTCCTTCACTTAAACAATTTGAATTCCTTCAAATCAACTGAGTGCCTTCTTCT
CAGTCTGCTTCATAGAGAAAAAAACAAAGAAGAATCAGATTCTACTGAGAGACTACAGATAAGCAATCCAGGATTTCAAG
AAAGATGTGCTAAGAAAATGCAGCTAGTTAATTTAAGAAACAGAAGAGTGAGTGCTAATGACATAATGGGAGGAAGTTGT
CATAATTTAATAGGGTTAAGTAATATGCATGATCTATCCTCTAACAGCAAACCAAGGTGCTGTTCTTTGGAAGGAATTGT
AGATGTGCCAGGGAATTCAAGTAAAGAGGCATCCAGTGTCTTTCATCAATCTTTTCCGAACATAGAAGGACAAAATAATA
AACTGTTTTTAGAGTCTAAGCCCAAACAGGAATTCCTGTTGAATCTTCATTCAGAGGAAACTATTCAAAAGCCATTCAGT
GCTGGTTTTAAGAGAAACTCTACTTTGACTGTTCAAGACCAAGAGGAGTTGTATAATGGGAAATGCAAGTCAAAACAGCT
TTGTAGGTCTCAGAGTTTGCTTTTAAGAAGTAGTACAAGAAGGAATAGTTATATCAATACACCAGTGGCTGAAATTATCA
TGAAACCAAATGTTGGACAAGGCAGCACAAGTGTGCAAACAGCTATGGAAAGTGAACTCGGAGAGTCTAGTGCCACAATC
AATAAAAGACTCTGCAAAAGTACAATAGAACTTTCAGAAAATTCTTTACTTCCAGCTTCTTCTATGTTGACTGGCACACA
AAGCTTGCTGCAACCTCATTTAGAGAGGGTTGCCATCGATGCTCTACAGTTATGTTGTTTGTTACTTCCCCCACCAAATC
GTAGAAAGCTTCAACTTTTAATGCGTATGATTTCCCGAATGAGTCAAAATGTTGATATGCCCGAACTTCATGATGCAATG
GGTACGAGGTCACTGATGATACATACCTTTTCTCGATGTGTGTTATGCTGTGCTGAAGAAGTGGATCTTGATGAGCTTCT
TGCTGGAAGATTAGTTTCTTTCTTAATGGATCATCATCAGGAAATTCTTCAAGTACCCTCTTACTTACAGACTGCAGTGG
AAAAACATCTTGACTACTTAAAAAAGGGACATATTGAAAATCCTGGAGATGGACTATTTGCTCCTTTGCCAACTTACTCA
TACTGTAAGCAGATTAGTGCTCAGGAGTTTGATGAGCAAAAAGTTTCTACCTCTCAAGCTGCAATTGCAGAACTTTTAGA
AAATATTATTAAAAACAGGAGTTTACCTCTAAAGGAGAAAAGAAAAAAACTAAAACAGTTTCAGAAGGAATATCCTTTGA
TATATCAGAAAAGATTTCCAACCACGGAGAGTGAAGCAGCACTTTTTGGTGACAAACCTACAATCAAGCAACCAATGCTG
ATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGATACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .11 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .06 RPM
SRP007412_kidney 0 .03 RPM
SRP007412_liver 0 .16 RPM
SRP007412_testis 38 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013839 ortholog_one2one 1 retrogene
retro_cpor_735,
Homo sapiens ENSG00000024526 ortholog_one2one 2 retrogenes
retro_hsap_1545, retro_hsap_4206,
Gorilla gorilla ENSGGOG00000016316 ortholog_one2one 1 retrogene
retro_ggor_1176,
Macaca mulatta ENSMMUG00000017766 ortholog_one2one 1 retrogene
retro_mmul_1176,
Mus musculus ENSMUSG00000028175 ortholog_one2one 1 retrogene
retro_mmus_3028,
Nomascus leucogenys ENSNLEG00000009334 ortholog_one2one 1 retrogene
retro_nleu_2931,
Otolemur garnettii ENSOGAG00000000934 ortholog_one2one 1 retrogene
retro_ogar_1907,
Pongo abelii ENSPPYG00000001248 ortholog_one2one 1 retrogene
retro_pabe_3441,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1041 92.02 59.98
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2. retro_ptro_2855 86.84 81.03
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Download FASTA sequences of all ENSPTRG00000000847 retrocopies