Parental gene: | SDHC, ENSPTRG00000001585 |
| Aliases: | None |
| Description: | succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa [Source:HGNC Symbol;Acc:10682] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:139659481..139708952(+) |
>ENSPTRG00000001585
ATGGCTGCGCTGTTGCTGAGACACGTTGGTCGTCATTGCCTCCGAGCCCACTTTAGCCCTCAGCTCTGTATCAGAAATGC
TGTTCCTTTGGGAACCACGGCCAAAGAAGAGATGGAGCGGTTCTGGAATAAGAATATAGGTTCAAACCGTCCTCTGTCTC
CCCACATCACTATCTACAGTTGGTCTCTTCCCATGGCGATGTCCATCTGCCACCGTGGCACTGGTATTGCTTTGAGTGCA
GATGTGGGACCTAGGAAAAGGCCTGAAGATTCCCCAGCTATACCAGTCTGGAGTGGTTGTCCTGGTTCTTACTGTGTTGT
CCTCTATGGGGCTGGCAGCCATGTGAAGAAAGGAGGCTCCCAGCATCATCTTCCTACACATTATTACATTCACCCATCTT
TCTGTTTGTCATTCTTATCTCCAGCCTGGGAAAAGTTCTCCTTATTTGTTTAG
ATGGCTGCGCTGTTGCTGAGACACGTTGGTCGTCATTGCCTCCGAGCCCACTTTAGCCCTCAGCTCTGTATCAGAAATGC
TGTTCCTTTGGGAACCACGGCCAAAGAAGAGATGGAGCGGTTCTGGAATAAGAATATAGGTTCAAACCGTCCTCTGTCTC
CCCACATCACTATCTACAGTTGGTCTCTTCCCATGGCGATGTCCATCTGCCACCGTGGCACTGGTATTGCTTTGAGTGCA
GATGTGGGACCTAGGAAAAGGCCTGAAGATTCCCCAGCTATACCAGTCTGGAGTGGTTGTCCTGGTTCTTACTGTGTTGT
CCTCTATGGGGCTGGCAGCCATGTGAAGAAAGGAGGCTCCCAGCATCATCTTCCTACACATTATTACATTCACCCATCTT
TCTGTTTGTCATTCTTATCTCCAGCCTGGGAAAAGTTCTCCTTATTTGTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 52 .62 RPM |
| SRP007412_cerebellum | 39 .54 RPM |
| SRP007412_heart | 90 .53 RPM |
| SRP007412_kidney | 137 .85 RPM |
| SRP007412_liver | 52 .15 RPM |
| SRP007412_testis | 26 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015351 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000015853 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000012992 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004757 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000015767 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000000499 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012411 | possible_ortholog | 11 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014439 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000005544 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003163 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000016835 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000030318 | ortholog_one2one | 2 retrogenes | |
| Takifugu rubripes | ENSTRUG00000001873 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009234 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_449 | 88.61 | 52.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_593 | 87.80 | 54.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1274 | 71.08 | 54.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2458 | 73.26 | 54.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000001585 retrocopies