Parental gene: | MRPL48, ENSPTRG00000004049 |
| Aliases: | None |
| Description: | Pan troglodytes mitochondrial ribosomal protein L48 (MRPL48), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001251970] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:71540736..71620193(+) |
>ENSPTRG00000004049
ATGAGCGGAACCTTGGAAAAGATGCTGTGCCTGAGGAACAATACCATTTTTAAGCAAGCCTTTTCTCTCTTAAGGTTTAG
AACTTCAGGAGAGAAGCCCATCTATTCTGTAGGTGGAATTCTACTAAGTATCAGTCGGCCCTACAAGACAAAGCCCACCC
ACGGCATTGGAAAGTACAAGCACTTAATTAAAGCAGAAGAGCCCAAGAAGAAGAAGGGAAAAGTGGAAGTGAGAGCCATT
AATTTGGGGACAGATTATGAATATGGGGTTTTAAATATTCATCTGACTGCATATGACATGACCCTGGCAGAGAGTTATGC
CCAGTATGTTCACAACCTCTGCAACTCTCTCTCCATTAAAGTCGAGGAAAGTTATGCGATGCCAACCAAAACCATAGAAG
TGTTGCAGTTGCAGGACCAAGGCAGCAAAATGTTCCTGGACTCAGTGCTTACCACCCATGAGCGAGTGGTTCAGATCAGC
GGTTTGAGTGCTACGTTTGCAGAAATTTTCTTGGAAATAATCCAAAGCAGTCTTCCTGAAGGAGTCAGACTGTCAGTGAA
GGAGCACACTGAAGAAGACTTCAAGGGACGATTCAAAGCTCGACCAGAACTGGAAGAACTGTTGGCCAAGTTGAAGTAG
ATGAGCGGAACCTTGGAAAAGATGCTGTGCCTGAGGAACAATACCATTTTTAAGCAAGCCTTTTCTCTCTTAAGGTTTAG
AACTTCAGGAGAGAAGCCCATCTATTCTGTAGGTGGAATTCTACTAAGTATCAGTCGGCCCTACAAGACAAAGCCCACCC
ACGGCATTGGAAAGTACAAGCACTTAATTAAAGCAGAAGAGCCCAAGAAGAAGAAGGGAAAAGTGGAAGTGAGAGCCATT
AATTTGGGGACAGATTATGAATATGGGGTTTTAAATATTCATCTGACTGCATATGACATGACCCTGGCAGAGAGTTATGC
CCAGTATGTTCACAACCTCTGCAACTCTCTCTCCATTAAAGTCGAGGAAAGTTATGCGATGCCAACCAAAACCATAGAAG
TGTTGCAGTTGCAGGACCAAGGCAGCAAAATGTTCCTGGACTCAGTGCTTACCACCCATGAGCGAGTGGTTCAGATCAGC
GGTTTGAGTGCTACGTTTGCAGAAATTTTCTTGGAAATAATCCAAAGCAGTCTTCCTGAAGGAGTCAGACTGTCAGTGAA
GGAGCACACTGAAGAAGACTTCAAGGGACGATTCAAAGCTCGACCAGAACTGGAAGAACTGTTGGCCAAGTTGAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .41 RPM |
| SRP007412_cerebellum | 18 .07 RPM |
| SRP007412_heart | 12 .91 RPM |
| SRP007412_kidney | 18 .91 RPM |
| SRP007412_liver | 7 .86 RPM |
| SRP007412_testis | 16 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000005585 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000175581 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000009716 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000030706 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017097 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009302 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000004771 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000005403 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000004657 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2417 | 88.15 | 99.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004049 retrocopies