Parental gene: | SNX19, ENSPTRG00000004487 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:128917746..128958451(-) |
>ENSPTRG00000004487
ATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCG
GAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTC
TGTCGGCATTGCTAGTGGTGTTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA
CGCTTCATCCCATTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACAGGAGATCAACCGCACCATCCA
GATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAG
CCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTCTTGCCCAGAGTGTTCTGACT
CTCTGCGGTTGTCACCTGCAGAGCTACATCCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCA
CCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTG
GCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTGGTGGTCGAA
CTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTAT
CTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCATTGCCCACATCTCTGCCACTGA
TTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG
GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAG
AAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATCTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGG
AATCTCCGCTGTCTGAACTGGGCAGAGAAACCATCATGCTCATGACTCCAGGCCGCTTTCTCTCTGACAGGATTCAGGAT
GCCCTGTGTGCCCTAGAGGGTTCCCAGGCTCTGGAACCCACAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGG
TCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCACATCGACACAGCAGACA
AGGAGATAGAACAAGGAGATGTTACCACCTCTGTTACAGCTTTGCTGAAGGGCCCAGAAAAGACCTGCCCCTCACGGCCG
TCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCC
ACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTC
GTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGTACGAG
ACAGCCCTTGACGGTGAAAACAGCAGCGGCCTGCAGCAGCTGGCCTACCACACTGTGAATCGTCGCTATCGGGAGTTCTT
GAATCTGCAGACCCGTCTGGAGGAGAAACCAGATCTACGAAAGTTCATCAAAAATGTGAAGGGTCCTAAAAAGCTCTTTC
CAGATCTTCCATTTGGAAACATGGACAGTGACAGAGTAGAAGCCCATAAGAGCCTCCTAGAATCATTCCTAAAGCAACTC
TGTGCCATTCCGGAGATCGCTAACAGTGAGGAGGTGCAGGAGTTCCTTGCTCTGAACACAGATGCTCGTATTGCCTTTGT
CAAGAAACCATTTATGGTCTCTAGAATAGACAAGATGGTGGTGAGTGCCATTGTGGACACCTTGAAGACAGCGTTTCCTC
GCTCTGAACCCCAGAGCCCCACAGAGGAGCTGAGTGAGGCCGAGACCGAAAGCAAGTCCCAGACAGAAGGCAAGAAGGCT
AGCAAGTCCAGGCTGAGGTTCTCATCCAGTAAAATTTCTCCAGCACTAAGTGTGACTGAAGCACAAGACAAGATTCTTTA
TTGTCTCCAGGAAGGCAATGTGGAGTCTGAGACTCTATCCATGTCTGCGATGGAATCTTTTATTGAAAAACAGACAAAGT
TACTGGAAATGCAGCCATCAAAAGCCCCAGAAAAAGATCCTGAACAACCTCCCAAAGGACGTGTGGACAGTTGCGTGTCA
GATGCAGCTGTGCCAGCCCAAGACCCCAGCAACAGCGATCCAGGAACAGAGACAGAGTTAGCTGACACAGCCCTGGATCT
GCTCCTCTTGCTACTAACAGAACAGTGGAAATGGCTATGTACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGA
CCCTAGTTCAAAGGTGGCTAGAGGTGCAGGTAGCTAATTTAACAAGTCCACAGCGCTGGGTGCAGTACCTCCGGCTTCTT
CAGGAGTCCATCTGGCCTGGTGGAGTTTTGCCTAAGTTTCCACGGCCCGTAAGGACCCAAGAGCAGAAACTGGCTGCTGA
GAAACAGGCTTTGCAGAGCCTGATGGGAGTCCTCCCAGATCTCGTAGTAGAAATTCTTGGGGTGAACAAATGCCGGCTGA
GCTGGGGTCTAGTCCTGGAGTCACTACAACAACCCCTCATCAACAGGCATTTGATTTACTGCCTTGGGGACATCATCCTG
GAATTCTTGGATCTCAGTGCCTCTGTTGAGGAGTCTGCTGCTACCACCTCTGCCTCAGATACCCCAGGCAACTCTAAGAG
GATGGGTGTCTCCTCTTAG
ATGAAGACAGAAACAGTGCCACCGTTCCAGGAAACTCCAGCTGGATCGAGCTGTCACCTCAATAACCTGTTGAGTAGCCG
GAAGCTGATGGCTGTGGGGGTCTTGCTTGGCTGGCTCCTGGTCATACACCTTCTGGTCAACGTGTGGCTGCTGTGCCTTC
TGTCGGCATTGCTAGTGGTGTTGGGAGGATGGCTGGGCTCCAGCCTCGCTGGAGTGGCTTCAGGTCGACTGCATCTGGAA
CGCTTCATCCCATTGGCCACCTGTCCTCCATGCCCTGAGGCAGAAAGGCAGCTGGAACAGGAGATCAACCGCACCATCCA
GATGATTATTCGAGATTTTGTGTTATCTTGGTACCGTTCCGTGAGCCAGGAGCCAGCCTTTGAGGAAGAAATGGAGGCAG
CCATGAAAGGGTTGGTCCAGGAGCTTCGGAGAAGGATGAGCGTGATGGACAGTCATGCTCTTGCCCAGAGTGTTCTGACT
CTCTGCGGTTGTCACCTGCAGAGCTACATCCAGGCAAAGGAGGCCACTGCAGGGAAGAATGGTCCAGTTGAGCCTTCCCA
CCTCTGGGAGGCTTACTGCCGGGCGACTGCCCCACATCCTGCTGTGCACAGCCCCAGTGCTGAAGTCACCTATACGCGTG
GCGTTGTGAATTTGTTGCTTCAAGGGCTGGTGCCCAAGCCCCACTTGGAGACTCGTACCGGACGCCATGTGGTGGTCGAA
CTCATCACATGCAATGTAATCTTACCACTGATCAGCAGGCTGTCAGATCCTGACTGGATCCACCTTGTACTCGTGGGTAT
CTTTTCCAAGGCCAGAGATCCAGCACCCTGCCCAGCCAGTGCCCCCGAACAGCCCTCATTGCCCACATCTCTGCCACTGA
TTGCTGAGGTAGAGCAGCTTCCAGAAGGGAGAGCTTCTCCAGTAGCAGCCCCAGTATTCCTAAGTTACAGTGAGCCAGAG
GGTTCTGCAGGCCCCTCTCCAGAGGTTGAAGAAGGCCACGAAGCTGTAGAGGGAGATTTGGGTGGGATGTGTGAAGAAAG
AAAAGTAGGAAACAACTCATCTCATTTCCTACAGCCAAATCTTCGAGGTCCCCTGTTCTTATGTGAAGACTCAGAGCTGG
AATCTCCGCTGTCTGAACTGGGCAGAGAAACCATCATGCTCATGACTCCAGGCCGCTTTCTCTCTGACAGGATTCAGGAT
GCCCTGTGTGCCCTAGAGGGTTCCCAGGCTCTGGAACCCACAGATGGTGAGGCATCTGAAGGAGCAGAGGCTGAGGAGGG
TCCAGGGACAGAAACAGAGACAGGCCTGCCGGTCTCCACACTGAATTCCTGCCCAGAGATCCACATCGACACAGCAGACA
AGGAGATAGAACAAGGAGATGTTACCACCTCTGTTACAGCTTTGCTGAAGGGCCCAGAAAAGACCTGCCCCTCACGGCCG
TCATGCTTAGAGAAGGATCTCACCAATGATGTGAGCTCCCTTGATCCTACTCTGCCACCAGTTCTGCTTTCCTCCTCTCC
ACCTGGTCCTCTCAGCTCAGCCACCTTCAGCTTTGAGCCCCTAAGCAGTCCCGATGGTCCAGTTATCATCCAGAACCTTC
GTATCACTGGCACCATTACAGCCCGAGAGCACAGTGGCACTGGATTCCACCCATACACACTCTATACTGTGAAGTACGAG
ACAGCCCTTGACGGTGAAAACAGCAGCGGCCTGCAGCAGCTGGCCTACCACACTGTGAATCGTCGCTATCGGGAGTTCTT
GAATCTGCAGACCCGTCTGGAGGAGAAACCAGATCTACGAAAGTTCATCAAAAATGTGAAGGGTCCTAAAAAGCTCTTTC
CAGATCTTCCATTTGGAAACATGGACAGTGACAGAGTAGAAGCCCATAAGAGCCTCCTAGAATCATTCCTAAAGCAACTC
TGTGCCATTCCGGAGATCGCTAACAGTGAGGAGGTGCAGGAGTTCCTTGCTCTGAACACAGATGCTCGTATTGCCTTTGT
CAAGAAACCATTTATGGTCTCTAGAATAGACAAGATGGTGGTGAGTGCCATTGTGGACACCTTGAAGACAGCGTTTCCTC
GCTCTGAACCCCAGAGCCCCACAGAGGAGCTGAGTGAGGCCGAGACCGAAAGCAAGTCCCAGACAGAAGGCAAGAAGGCT
AGCAAGTCCAGGCTGAGGTTCTCATCCAGTAAAATTTCTCCAGCACTAAGTGTGACTGAAGCACAAGACAAGATTCTTTA
TTGTCTCCAGGAAGGCAATGTGGAGTCTGAGACTCTATCCATGTCTGCGATGGAATCTTTTATTGAAAAACAGACAAAGT
TACTGGAAATGCAGCCATCAAAAGCCCCAGAAAAAGATCCTGAACAACCTCCCAAAGGACGTGTGGACAGTTGCGTGTCA
GATGCAGCTGTGCCAGCCCAAGACCCCAGCAACAGCGATCCAGGAACAGAGACAGAGTTAGCTGACACAGCCCTGGATCT
GCTCCTCTTGCTACTAACAGAACAGTGGAAATGGCTATGTACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGA
CCCTAGTTCAAAGGTGGCTAGAGGTGCAGGTAGCTAATTTAACAAGTCCACAGCGCTGGGTGCAGTACCTCCGGCTTCTT
CAGGAGTCCATCTGGCCTGGTGGAGTTTTGCCTAAGTTTCCACGGCCCGTAAGGACCCAAGAGCAGAAACTGGCTGCTGA
GAAACAGGCTTTGCAGAGCCTGATGGGAGTCCTCCCAGATCTCGTAGTAGAAATTCTTGGGGTGAACAAATGCCGGCTGA
GCTGGGGTCTAGTCCTGGAGTCACTACAACAACCCCTCATCAACAGGCATTTGATTTACTGCCTTGGGGACATCATCCTG
GAATTCTTGGATCTCAGTGCCTCTGTTGAGGAGTCTGCTGCTACCACCTCTGCCTCAGATACCCCAGGCAACTCTAAGAG
GATGGGTGTCTCCTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 67 .37 RPM |
| SRP007412_cerebellum | 70 .12 RPM |
| SRP007412_heart | 69 .92 RPM |
| SRP007412_kidney | 91 .82 RPM |
| SRP007412_liver | 38 .72 RPM |
| SRP007412_testis | 226 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000120451 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004069 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_849 | 86.70 | 55.04 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1243 | 86.30 | 83.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3076 | 85.81 | 58.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004487 retrocopies