Parental gene: | MYL12B, ENSPTRG00000009836 |
| Aliases: | None |
| Description: | myosin, light chain 12B, regulatory [Source:HGNC Symbol;Acc:29827] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 18:13379219..13395718(-) |
>ENSPTRG00000009836
ATGTCGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGCGCAACATCCAATGTGTTTGCCATGTTTGA
CCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGCTTCATCGACAAGGAAGATT
TGCATGATATGCTTGCTTCTCTAGGGAAGAATCCCACTGATGCATACCTTGATGCCATGATGAATGAGGCCCCAGGGCCC
ATCAATTTCACCATGTTCCTGACCATGTTTGGTGAGAAGTTAAATGGCACAGATCCTGAAGATGTCATCAGAAACGCCTT
TGCTTGCTTTGATGAAGAAGCAACAGGCACCATTCAGGAAGATTACCTAAGAGAGCTGCTGACAACCATGGGGGATCGGT
TTACAGATGAGGAAGTGGATGAGCTGTACAGAGAAGCACCTATTGACAAAAAGGGGAATTTCAATTACATCGAGTTCACA
CGCATCCTGAAACATGGAGCCAAAGACAAAGATGACTGA
ATGTCGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGCGCAACATCCAATGTGTTTGCCATGTTTGA
CCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGCTTCATCGACAAGGAAGATT
TGCATGATATGCTTGCTTCTCTAGGGAAGAATCCCACTGATGCATACCTTGATGCCATGATGAATGAGGCCCCAGGGCCC
ATCAATTTCACCATGTTCCTGACCATGTTTGGTGAGAAGTTAAATGGCACAGATCCTGAAGATGTCATCAGAAACGCCTT
TGCTTGCTTTGATGAAGAAGCAACAGGCACCATTCAGGAAGATTACCTAAGAGAGCTGCTGACAACCATGGGGGATCGGT
TTACAGATGAGGAAGTGGATGAGCTGTACAGAGAAGCACCTATTGACAAAAAGGGGAATTTCAATTACATCGAGTTCACA
CGCATCCTGAAACATGGAGCCAAAGACAAAGATGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 78 .40 RPM |
| SRP007412_cerebellum | 74 .53 RPM |
| SRP007412_heart | 98 .02 RPM |
| SRP007412_kidney | 209 .79 RPM |
| SRP007412_liver | 115 .52 RPM |
| SRP007412_testis | 92 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012665 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000032168 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000007004 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000007562 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006985 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000022871 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000118680 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004051 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005189 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000021464 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005011 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000034868 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006907 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000029777 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000009032 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000013458 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015733 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010418 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1006 | 89.02 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2118 | 90.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2340 | 92.31 | 98.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2705 | 89.02 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000009836 retrocopies