Parental gene: | PTPN2, ENSPTRG00000009884 |
| Aliases: | None |
| Description: | Tyrosine-protein phosphatase non-receptor type [Source:UniProtKB/TrEMBL;Acc:H2QEA6] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 18:3646430..3737356(+) |
>ENSPTRG00000009884
ATGCCCACCACCATCGAGCGGGAGTTCGAAGAGTTGGATACTCAGCGTCGCTGGCAGCCGCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCTGAGAATGATTATATTAATGCCAGTTTAGTTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCATTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGT
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCATGGGCCTGCGGTGA
TCCACTGTAGCGCAGGCATTGGGCGCTCTGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATTAAACAAGTGTTACTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACGATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCCTTTGATCATTCACCAAACAAAATAATAACTGAAAAATACAATGGGAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATATACAGGACTTTCCTCTAAAATGCAAGATACAATGGAGGAGAACAGTGAGAG
TGCTCTACGGAAACGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTATGTCAGTCATTTTGGTT
GGCGCTTTTGTTGGCTGGACACTGTTTTTTCAGCAAAATGCCCTATAA
ATGCCCACCACCATCGAGCGGGAGTTCGAAGAGTTGGATACTCAGCGTCGCTGGCAGCCGCTGTACTTGGAAATTCGAAA
TGAGTCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAATCGAAACAGATACAGAGATGTAAGCCCAT
ATGATCACAGTCGTGTTAAACTGCAAAATGCTGAGAATGATTATATTAATGCCAGTTTAGTTGACATAGAAGAGGCACAA
AGGAGTTACATCTTAACACAGGGTCCACTTCCTAACACATGCTGCCATTTCTGGCTTATGGTTTGGCAGCAGAAGACCAA
AGCAGTTGTCATGCTGAACCGCATTGTGGAGAAAGAATCGGTTAAATGTGCACAGTACTGGCCAACAGATGACCAAGAGT
TGCTGTTTAAAGAAACAGGATTCAGTGTGAAGCTCTTGTCAGAAGATGTGAAGTCGTATTATACAGTACATCTACTACAA
TTAGAAAATATCAATAGTGGTGAAACCAGAACAATATCTCACTTTCATTATACTACCTGGCCAGATTTTGGAGTCCCTGA
ATCACCAGCTTCATTTCTCAATTTCTTGTTTAAAGTGAGAGAATCTGGCTCCTTGAACCCTGACCATGGGCCTGCGGTGA
TCCACTGTAGCGCAGGCATTGGGCGCTCTGGCACCTTCTCTCTGGTAGACACTTGTCTTGTTTTGATGGAAAAAGGAGAT
GATATTAACATTAAACAAGTGTTACTGAACATGAGAAAATACCGAATGGGTCTTATTCAGACCCCAGATCAACTGAGATT
CTCATACATGGCTATAATAGAAGGAGCAAAATGTATAAAGGGAGATTCTAGTATACAGAAACGATGGAAAGAACTTTCTA
AGGAAGACTTATCTCCTGCCTTTGATCATTCACCAAACAAAATAATAACTGAAAAATACAATGGGAACAGAATAGGTCTA
GAAGAAGAAAAACTGACAGGTGACCGATATACAGGACTTTCCTCTAAAATGCAAGATACAATGGAGGAGAACAGTGAGAG
TGCTCTACGGAAACGTATTCGAGAGGACAGAAAGGCCACCACAGCTCAGAAGGTGCAGCAGATGAAACAGAGGCTAAATG
AGAATGAACGAAAAAGAAAAAGGTGGTTATATTGGCAACCTATTCTCACTAAGATGGGGTTTATGTCAGTCATTTTGGTT
GGCGCTTTTGTTGGCTGGACACTGTTTTTTCAGCAAAATGCCCTATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 4 .74 RPM |
| SRP007412_cerebellum | 12 .69 RPM |
| SRP007412_heart | 4 .43 RPM |
| SRP007412_kidney | 9 .62 RPM |
| SRP007412_liver | 12 .70 RPM |
| SRP007412_testis | 7 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000000867 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005102 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000016588 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000005636 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000005577 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000175354 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010259 | ortholog_one2many | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000011818 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005156 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000021422 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009074 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000028605 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008983 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000004601 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_361 | 85.84 | 78.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_813 | 77.95 | 91.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000009884 retrocopies