Parental gene:

TSN, ENSPTRG00000012420

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:122351103..122363411(+)


>ENSPTRG00000012420
ATGTCTGTGAGCGAGATCTTCGTGGAGCTGCAGGGCTTTTTGGCTGCCGAGCAGGACATCCGAGAGGAAATCAGAAAAGT
TGTACAGAGTTTAGAACAAACAGCTCGAGAGATTTTAACTCTACTGCAAGGGGTCCATCAGGGTGCTGGGTTTCAGGACA
TTCCAAAGAGGTGTTTGAAAGCTCGAGAACATTTTGGTACAGTAAAAACACATCTAACATCTTTGAAGACCAAATTTCCT
GCTGAACAGTATTACAGATTTCATGAGCACTGGAGGTTTGTGTTGCAGCGCTTGGTCTTCTTGGCAGCATTTGTTGTGTA
TTTGGAAACAGAAACACTAGTGACTCGAGAAGCAGTTACAGAAATTCTTGGCATTGAGCCAGATCGGGAGAAAGGATTTC
ATCTGGATGTAGAAGATTATCTCTCAGGAGTTCTAATTCTTGCCAGTGAACTGTCGAGGCTGTCTGTCAACAGCGTGACT
GCTGGAGACTACTCCCGACCCCTCCACATCTCCACCTTCATCAATGAGCTGGATTCTGGTTTTCGCCTTCTCAACCTGAA
AAATGACTCCCTGAGGAAGCGCTACGACGGATTGAAATATGACGTGAAGAAAGTAGAGGAAGTGGTCTATGATCTCTCCA
TCCGGGGCTTTAATAAGGAGACGGCAGCAGCTTGTGTTGAAAAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 35 .18 RPM
SRP007412_cerebellum 44 .88 RPM
SRP007412_heart 26 .87 RPM
SRP007412_kidney 46 .84 RPM
SRP007412_liver 32 .01 RPM
SRP007412_testis 97 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006059 ortholog_one2one 1 retrogene
retro_btau_1598,
Dasypus novemcinctus ENSDNOG00000025740 ortholog_one2one 2 retrogenes
retro_dnov_1581, retro_dnov_907,
Felis catus ENSFCAG00000027149 ortholog_one2one 1 retrogene
retro_fcat_1577,
Homo sapiens ENSG00000211460 ortholog_one2one 1 retrogene
retro_hsap_3760,
Gorilla gorilla ENSGGOG00000002216 ortholog_one2one 2 retrogenes
retro_ggor_2528, retro_ggor_2610,
Myotis lucifugus ENSMLUG00000012656 ortholog_one2one 1 retrogene
retro_mluc_1420,
Macaca mulatta ENSMMUG00000021119 ortholog_one2one 1 retrogene
retro_mmul_1718,
Monodelphis domestica ENSMODG00000000147 ortholog_one2one 1 retrogene
retro_mdom_1896,
Nomascus leucogenys ENSNLEG00000001202 ortholog_one2one 1 retrogene
retro_nleu_170,
Ornithorhynchus anatinus ENSOANG00000003457 ortholog_one2one 1 retrogene
retro_oana_120,
Oryctolagus cuniculus ENSOCUG00000023529 ortholog_one2one 1 retrogene
retro_ocun_271,
Otolemur garnettii ENSOGAG00000030436 ortholog_one2one 3 retrogenes
retro_ogar_1221, retro_ogar_2875, retro_ogar_3426,
Tarsius syrichta ENSTSYG00000004395 ortholog_one2one 1 retrogene
retro_tsyr_1593,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2551 62.33 63.16
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Download FASTA sequences of all ENSPTRG00000012420 retrocopies