Parental gene:

SAMM50, ENSPTRG00000014483

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:22:42723576..42764971(+)


>ENSPTRG00000014483
ATGGGGACTGTGCACGCCCGGAGTTTGGAGCCTCTTCCATCAAGTGGACCTGATTTTGGAGGATTAGGAGAAGAAGCTGA
ATTTGTTGAAGTTGAGCCTGAAGCTAAACAGGAAATTCTTGAAAACAAAGATGTGCTTGTTCAACATGTTCATTTTGATG
GACTTGGAAGGACTAAAGATGATGTCATCATTTGTGAAATTGGAGATGTTTTCAAGGCCAAAAACCTAATTGAGGTAATG
CGGAAATCTCATGAAGCCCGTGAAAAATTGCTCCGTCTTGGAATTTTTAGACAAGTGGATGTTTTGATTGACACATGTCA
AGGTGATGATGCACTTCCAAATGGGTTAGACGTTACCTTTGAAGTAACTGAATTGAGGAGATTAACGGGCAGTTATAACA
CCATGGTTGGAAACAATGAAGGCAGTATGGTACTTGGCCTCAAGCTTCCTAATCTTCTTGGTCGTGCAGAAAAGGTGACC
TTTCAGTTTTCCTATGGAACAAAAGAAACTTCGTATGGCCTGTCCTTCTTCAAACCACGGCCCGGAAACTTCGAAAGAAA
TTTCTCTGTAAACTTATATAAAGTTACTGGACAGTTCCCTTGGAGCTCACTGCGGGAGACGGACAGAGGAATGTCAGCTG
AGTACAGTTTTCCCATATGGAAGACCAGCCACACTGTCAAGTGGGAAGGCGTGTGGCGAGAACTGGGCTGCCTCTCAAGG
ACGGCGTCATTTGCTGTTCGAAAAGAAAGCGGACATTCACTGAAATCATCTCTTTCGCACGCCATGGTCATCGATTCTCG
GAATTCTTCCATCTTACCAAGGAGAGGTGCTTTGCTGAAAGTTAACCAGGAACTGGCAGGCTACACCGGCGGGGATGTGA
GCTTCATCAAAGAAGATTTTGAACTTCAGTTGAACAAGCAACTCATATTTGATTCAGTTTTTTCAGCGTCTTTCTGGGGC
GGAATGTTGGTACCCATTGGTGATAAGCCGTCAAGCATTGCTGATAGGTTTTACCTCGGGGGACCCACAAGCGTCCGCGG
ATTCAGCATGCACAGCATCGGGCCACAGAGCGAAGGAGACTACCTAGGTGGAGAAGCGTACTGGGCCGGCGGCCTGCACC
TCTACACCCCATTACCTTTCCGGCCAGGCCAGGGTGGCTTTGGAGAACTTTTCCGAACACACTTCTTTCTCAACGCAGGA
AACCTCTGCAACCTCAACTATGGGGAGGGCCCCAAAGCTCATATTCGTAAGCTGGCTGAGTGCATCCGCTGGTCGTACGG
GGCCGGGATTGTCCTCAGGCTTGGCAACATCGCTCGGTTGGAACTTAATTACTGCGTCCCCATGGGAGTACAGACAGGCG
ACAGGATATGTGATGGCGTCCAGTTTGGAGCTGGGATAAGGTTCCTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .32 RPM
SRP007412_cerebellum 48 .29 RPM
SRP007412_heart 77 .15 RPM
SRP007412_kidney 89 .26 RPM
SRP007412_liver 70 .02 RPM
SRP007412_testis 65 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015070 ortholog_one2one 2 retrogenes
retro_cjac_2277, retro_cjac_605,
Homo sapiens ENSG00000100347 ortholog_one2one 1 retrogene
retro_hsap_4233,
Macaca mulatta ENSMMUG00000015446 ortholog_one2one 1 retrogene
retro_mmul_1152,
Nomascus leucogenys ENSNLEG00000015693 ortholog_one2one 1 retrogene
retro_nleu_1035,
Pongo abelii ENSPPYG00000011918 ortholog_one2one 1 retrogene
retro_pabe_3404,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2876 66.85 75.91
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Download FASTA sequences of all ENSPTRG00000014483 retrocopies