Parental gene: | GRPEL1, ENSPTRG00000015894 |
| Aliases: | None |
| Description: | GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:H2QP70] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 4:7218476..7226578(-) |
>ENSPTRG00000015894
ATGGCGGCTCAGTGCGTGAGGCTGGCGCGGCGCAGTCTTCCTGCTTTGGCGTTGTCTCTCAGACCATCTCCCCGGTTGTT
GTGCACAGCCACGAAACAAAAGAACAGTGGCCAGAACCTGGAAGAGGACATGGGTCAGAGTGAACAGAAGGCAGATCCTC
CTGCTACAGAGAAGACCCTCCTGGAAGAGAAGGTCAAGTTGGAGGAGCAGCTGAAGGAGACTGTGGAAAAATATAAACGA
GCTTTGGCAGACACTGAGAACTTACGGCAGAGGAGCCAGAAATTGGTGGAGGAGGCAAAATTATACGGCATTCAAGCCTT
CTGCAAGGACTTGTTGGAGGTGGCAGACGTTCTGGAGAAGGCAACACAGTGTGTTCCAAAAGAAGAAATTAAAGACGATA
ACCCTCACCTGAAGAACCTCTATGAGGGGCTGGTCATGACTGAAGTCCAGATCCAGAAGGTGTTCACAAAGCATGGCTTG
CTCAAGTTGAACCCTGTCGGAGCCAAGTTCGACCCTTATGAACATGAGGCCTTGTTCCACACACCGGTTGAGGGGAAGGA
GCCAGGCACAGTGGCCCTAGTTAGCAAAGTGGGGTACAAGCTGCATGGGCGCACTCTGAGACCCGCCCTGGTGGGGGTGG
TGAAGGAAGCTTAG
ATGGCGGCTCAGTGCGTGAGGCTGGCGCGGCGCAGTCTTCCTGCTTTGGCGTTGTCTCTCAGACCATCTCCCCGGTTGTT
GTGCACAGCCACGAAACAAAAGAACAGTGGCCAGAACCTGGAAGAGGACATGGGTCAGAGTGAACAGAAGGCAGATCCTC
CTGCTACAGAGAAGACCCTCCTGGAAGAGAAGGTCAAGTTGGAGGAGCAGCTGAAGGAGACTGTGGAAAAATATAAACGA
GCTTTGGCAGACACTGAGAACTTACGGCAGAGGAGCCAGAAATTGGTGGAGGAGGCAAAATTATACGGCATTCAAGCCTT
CTGCAAGGACTTGTTGGAGGTGGCAGACGTTCTGGAGAAGGCAACACAGTGTGTTCCAAAAGAAGAAATTAAAGACGATA
ACCCTCACCTGAAGAACCTCTATGAGGGGCTGGTCATGACTGAAGTCCAGATCCAGAAGGTGTTCACAAAGCATGGCTTG
CTCAAGTTGAACCCTGTCGGAGCCAAGTTCGACCCTTATGAACATGAGGCCTTGTTCCACACACCGGTTGAGGGGAAGGA
GCCAGGCACAGTGGCCCTAGTTAGCAAAGTGGGGTACAAGCTGCATGGGCGCACTCTGAGACCCGCCCTGGTGGGGGTGG
TGAAGGAAGCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 24 .36 RPM |
| SRP007412_cerebellum | 25 .13 RPM |
| SRP007412_heart | 26 .55 RPM |
| SRP007412_kidney | 42 .71 RPM |
| SRP007412_liver | 53 .55 RPM |
| SRP007412_testis | 38 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000014364 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000109519 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000002590 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002955 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010471 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011822 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000032291 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000011314 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014573 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000017396 | within_species_paralog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000007667 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2544 | 67.50 | 72.81 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2633 | 65.89 | 58.99 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2636 | 67.36 | 64.06 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000015894 retrocopies