Parental gene: | UCHL1, ENSPTRG00000016009 |
| Aliases: | None |
| Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 4:41316789..41328405(+) |
>ENSPTRG00000016009
ATGCAGCTCAAGCCGATGGAGATCAACCCCGAGGTGAGCGCCAGGGTGCTGTCCCGGCTGGGGGTCGCCGGCCAGTGGCG
CTTCGTGGACGTGCTGGGGCTGGAAGAGGAGTCTCTGGGCTCGGTGCCAGCGCCTGCCTGCGCGCTGCTGCTGCTGTTTC
CCCTCACGGCCCAGCATGAGAACTTCAGGAAAAAGCAGATTGAAGAGCTGAAGGGACAAGAAGTTAGTCCTAAAGTGTAC
TTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCGGACTTATTCACGCAGTGGCCAATAATCAAGATAAACTGGG
ATTTGAGGATGGATCAGTTCTGAAACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAGCAAAATGCTTTG
AAAAGAATGAGGCCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAATGTCGGGTAGATGACAAGGTGAATTTC
CATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGACGAATGCCTTTTCCGGTGAACCATGGCGC
CAGTTCAGAGGACACCCTGCTGAAGGACGCTGCCAAGGTCTGCAGAGAATTCACCGAGCGTGAGCAAGGAGAAGTCCGCT
TCTCTGCTGTGGCTCTCTGCAAGGCAGCCTAA
ATGCAGCTCAAGCCGATGGAGATCAACCCCGAGGTGAGCGCCAGGGTGCTGTCCCGGCTGGGGGTCGCCGGCCAGTGGCG
CTTCGTGGACGTGCTGGGGCTGGAAGAGGAGTCTCTGGGCTCGGTGCCAGCGCCTGCCTGCGCGCTGCTGCTGCTGTTTC
CCCTCACGGCCCAGCATGAGAACTTCAGGAAAAAGCAGATTGAAGAGCTGAAGGGACAAGAAGTTAGTCCTAAAGTGTAC
TTCATGAAGCAGACCATTGGGAATTCCTGTGGCACAATCGGACTTATTCACGCAGTGGCCAATAATCAAGATAAACTGGG
ATTTGAGGATGGATCAGTTCTGAAACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAGCAAAATGCTTTG
AAAAGAATGAGGCCATACAGGCAGCCCATGATGCCGTGGCACAGGAAGGCCAATGTCGGGTAGATGACAAGGTGAATTTC
CATTTTATTCTGTTTAACAACGTGGATGGCCACCTCTATGAACTTGATGGACGAATGCCTTTTCCGGTGAACCATGGCGC
CAGTTCAGAGGACACCCTGCTGAAGGACGCTGCCAAGGTCTGCAGAGAATTCACCGAGCGTGAGCAAGGAGAAGTCCGCT
TCTCTGCTGTGGCTCTCTGCAAGGCAGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 627 .29 RPM |
| SRP007412_cerebellum | 156 .01 RPM |
| SRP007412_heart | 5 .28 RPM |
| SRP007412_kidney | 19 .09 RPM |
| SRP007412_liver | 5 .11 RPM |
| SRP007412_testis | 8 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019346 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000002185 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000012347 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000154277 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000008809 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013774 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010138 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017176 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001353 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008305 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_3028 | 62.09 | 78.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3029 | 58.71 | 87.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000016009 retrocopies