RetrogeneDB ID: retro_mluc_2113

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430039:1456146..1456506(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCHL1
• Ensembl ID: ENSMLUG00000010138
• Aliases: None
• Description: None

Sequence

>retro_mluc_2113
AGTAATGAAGACAAACTGGAATTTGAGAATGGGTCAGTCCTGAAAGATTTTGTCAGAAATGGAGAAGTTACCCCCTGAAG
ACAGAGCAAAATGCTTGGAAAAGAATGAGGCCATTCAGGCAGCCCATGAAGCCTGGTGCAGGAAGGCCAGTGTTGGGTAG
ATGAAAAAGTGAACTTTCATTTTATTCTGTATAACAACATGGATGGCAACCTCTAGGAACTTGATGGACAAATGCCATTT
CTGGTGAACCATGGCACCAATGCAGAGGCCTCGCTGCTGCAGGACGCAGCCAAGATCTACTGAGAAATCACAGAGTGTGA
GCAAGGAGAAGTCCACTTTTCTGCTGGGGCCCTCTGCAAG

Alignment

ORF - retro_mluc_2113 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.54 %
• Parental protein coverage: 54.26 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  NNQDKLEFEDGSVLKQFLSETEKLSP-EDRAKCFEKNEAIQTAHDA-VAQEGQCRVDDKVNFHFILFNNV
          .N.DKLEFE.GSVLK.F....E...P.EDRAKC.EKNEAIQ.AH.A...QEGQC.VD.KVNFHFIL.NN.
Retrocopy SNEDKLEFENGSVLKDFVRNGE-VTP>EDRAKCLEKNEAIQAAHEA<LVQEGQCWVDEKVNFHFILYNNM

Parental  DGHLYELDGRMPFPVNHGTSAEDSLLQDAAKVCREFTEREQGEVRFSAVALCK
          DG.L.ELDG.MPF.VNHGT.AE.SLLQDAAK...E.TE.EQGEV.FSA.ALCK
Retrocopy DGNL*ELDGQMPFLVNHGTNAEASLLQDAAKIY*EITECEQGEVHFSAGALCK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2113 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019346	1 retrocopy	retro_cjac_365,
Erinaceus europaeus	ENSEEUG00000002185	3 retrocopies	retro_eeur_150, retro_eeur_573, retro_eeur_598,
Echinops telfairi	ENSETEG00000012347	1 retrocopy	retro_etel_44,
Homo sapiens	ENSG00000154277	2 retrocopies	retro_hsap_781, retro_hsap_782,
Gorilla gorilla	ENSGGOG00000008809	1 retrocopy	retro_ggor_648,
Macropus eugenii	ENSMEUG00000013774	1 retrocopy	retro_meug_8,
Myotis lucifugus	ENSMLUG00000003442	1 retrocopy	retro_mluc_362,
Myotis lucifugus	ENSMLUG00000010138	2 retrocopies	retro_mluc_1216, retro_mluc_2113 ,
Nomascus leucogenys	ENSNLEG00000017176	2 retrocopies	retro_nleu_2582, retro_nleu_2583,
Oryctolagus cuniculus	ENSOCUG00000001353	1 retrocopy	retro_ocun_309,
Pan troglodytes	ENSPTRG00000016009	2 retrocopies	retro_ptro_3028, retro_ptro_3029,
Tarsius syrichta	ENSTSYG00000008305	1 retrocopy	retro_tsyr_1191,