Parental gene:

VTA1, ENSPTRG00000018662

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:143583645..143659819(+)


>ENSPTRG00000018662
ATGGCCGCGCTTGCACCGCTGCCCCCGCTCCCCGCACAGTTCAAGAGCATACAGCATCATCTGAGGACGGCTCAGGAGCA
TGACAAGCGAGACCCTGTGGTGGCTTATTACTGTCGTTTATACGCAATGCAGACTGGAATGAAGATCGATAGTAAAACTC
CTGAATGTCGCAAATTTTTATCAAAGTTAATGGATCAGTTAGAAGCTCTAAAGAAGCAGTTGGGTGATAATGAAGCTATT
ACTCAAGAAATAGTGGGTTGTGCCCATTTGGAGAATTATGCTTTGAAAATGTTTTTGTATGCAGACAATGAAGATCGTGC
TGGACGATTTCACAAAAACATGATCAAGTCCTTCTATACTGCAAGTCTTTTGATAGATGTCATAACAGTATTTGGAGAAC
TCACCGATGAAAATGTGAAACACAGGAAGTATGCCAGATGGAAGGCAACATACATCCATAATTGTTTAAAGAATGGGGAG
ACTCCTCAAGCAGGCCCTGTTGGAATTGAAGAAGATAATGATATTGAAGAAAATGAAGATGCTGGAGCAGCCTCTCTGCC
CACTCAGCCAACTCAGCCATCATCATCTTCAACTTATGACCCAAGCAACATGCCATCAGGCAACTATACTGGAATACAGA
TTCCTCCGGGTGCACACGCTCCAGCTAATACACCAGCAGAAGTGCCTCACAGCACAGGTGTAGCAAGTAATACTATCCAA
CCTACTCCACAGACTATACCTGCCATTGATCCTGCACTTTTCAATACAATTTCCCAGGGGGATGTTCGTCTAACCCCAGA
AGACTTTGCTAGAGCTCAGAAGTACTGCAAATATGCTGGCAGTGCTTTGCAGTATGAAGATGTAAGCACTGCTGTCCAGA
ATCTACAAAAGGCTCTCAAGTTACTGACGACAGGCAGAGAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 27 .87 RPM
SRP007412_cerebellum 29 .47 RPM
SRP007412_heart 16 .82 RPM
SRP007412_kidney 22 .10 RPM
SRP007412_liver 10 .44 RPM
SRP007412_testis 13 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000009844 ortholog_one2one 1 retrogene
retro_hsap_4088,
Gorilla gorilla ENSGGOG00000015524 ortholog_one2one 1 retrogene
retro_ggor_2742,
Microcebus murinus ENSMICG00000004420 ortholog_one2one 2 retrogenes
retro_mmur_1290, retro_mmur_290,
Macaca mulatta ENSMMUG00000023012 ortholog_one2one 1 retrogene
retro_mmul_751,
Nomascus leucogenys ENSNLEG00000015053 ortholog_one2one 1 retrogene
retro_nleu_1911,
Oryctolagus cuniculus ENSOCUG00000002554 ortholog_one2one 10 retrogenes
retro_ocun_1543, retro_ocun_1689, retro_ocun_1790, retro_ocun_1810, retro_ocun_1821, retro_ocun_1832, retro_ocun_1848, retro_ocun_1853, retro_ocun_1864, retro_ocun_965,
Rattus norvegicus ENSRNOG00000011540 ortholog_one2one 1 retrogene
retro_rnor_799,
Tursiops truncatus ENSTTRG00000014998 ortholog_one2one 1 retrogene
retro_ttru_1825,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2773 57.21 70.36
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Download FASTA sequences of all ENSPTRG00000018662 retrocopies