Parental gene:

SOD2, ENSPTRG00000018757

Aliases:None
Description:Pan troglodytes superoxide dismutase 2, mitochondrial (SOD2), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001009022]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:161438448..161452720(-)


>ENSPTRG00000018757
ATGTTGAGCCGGGCAGTGTGCGGCACCAGCAGGCAGCTGGCTCCGGCTTTGGGGTATCTGGGCTCCAGGCAGAAGCACAG
CCTCCCCGACCTGCCCTACGACTACGGCGCCCTGGAACCTCACATCAACGCGCAGATCATGCAGCTGCACCACAGCAAGC
ACCACGCGGCCTACGTGAATAACCTGAACGTCACCGAGGAGAAGTACCAGGAGGCGTTGGCCAAGGGAGATGTTACAGCC
CAGATAGCTCTTCAGCCTGCACTGAAGTTCAATGGTGGTGGTCATATCAATCATAGCATTTTCTGGACAAACCTCAGCCC
TAACGGTGGTGGAGAACCCAAAGGGGAGATGCTGGAAGCCATCAAACGTGACTTTGGTTCCTTTGACAAGTTTAAGGAGA
AGCTGACGGCTGCATCTGTTGGTGTCCAAGGCTCAGGTTGGGGTTGGCTTGGTTTCAATAAGGAACGGGGACACTTACAA
ATTGCTGCTTGTCCAAATCAGGATCCACTGCAAGGAACAACAGGCCTTATTCCACTGCTGGGGATTGATGTGTGGGAGCA
CGCTTACTACCTTCAGTATAAAAATGTCAGGCCTGATTATCTAAAAGCTATTTGGAATGTAATCAACTGGGAGAATGTAA
CTGAAAGATACATGGCTTGCAAAAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 50 .57 RPM
SRP007412_cerebellum 75 .68 RPM
SRP007412_heart 223 .76 RPM
SRP007412_kidney 410 .69 RPM
SRP007412_liver 3765 .38 RPM
SRP007412_testis 87 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015466 ortholog_one2one 1 retrogene
retro_amel_786,
Canis familiaris ENSCAFG00000000671 ortholog_one2one 1 retrogene
retro_cfam_1795,
Choloepus hoffmanni ENSCHOG00000003215 ortholog_one2one 4 retrogenes
retro_chof_1952, retro_chof_1966, retro_chof_2620, retro_chof_937,
Callithrix jacchus ENSCJAG00000011664 ortholog_one2one 1 retrogene
retro_cjac_3032,
Dasypus novemcinctus ENSDNOG00000007907 ortholog_one2one 1 retrogene
retro_dnov_1653,
Equus caballus ENSECAG00000011797 ortholog_one2many 2 retrogenes
retro_ecab_70, retro_ecab_840,
Echinops telfairi ENSETEG00000016400 ortholog_one2one 1 retrogene
retro_etel_731,
Felis catus ENSFCAG00000002843 ortholog_one2one 1 retrogene
retro_fcat_1200,
Homo sapiens ENSG00000112096 ortholog_one2one 1 retrogene
retro_hsap_430,
Gorilla gorilla ENSGGOG00000008212 ortholog_one2one 1 retrogene
retro_ggor_419,
Myotis lucifugus ENSMLUG00000012242 ortholog_one2one 1 retrogene
retro_mluc_528,
Monodelphis domestica ENSMODG00000007521 ortholog_one2one 1 retrogene
retro_mdom_373,
Mustela putorius furo ENSMPUG00000005045 ortholog_one2one 1 retrogene
retro_mputfur_1382,
Nomascus leucogenys ENSNLEG00000011061 ortholog_one2one 1 retrogene
retro_nleu_1023,
Otolemur garnettii ENSOGAG00000017100 ortholog_one2one 1 retrogene
retro_ogar_1123,
Pongo abelii ENSPPYG00000017143 ortholog_one2one 1 retrogene
retro_pabe_292,
Pteropus vampyrus ENSPVAG00000005302 ortholog_one2one 1 retrogene
retro_pvam_288,
Rattus norvegicus ENSRNOG00000019048 ortholog_one2one 1 retrogene
retro_rnor_2221,
Sarcophilus harrisii ENSSHAG00000014795 ortholog_one2one 1 retrogene
retro_shar_210,
Ictidomys tridecemlineatus ENSSTOG00000008738 ortholog_one2one 1 retrogene
retro_itri_1432,
Tupaia belangeri ENSTBEG00000002100 ortholog_one2one 1 retrogene
retro_tbel_665,
Tarsius syrichta ENSTSYG00000000457 ortholog_one2one 1 retrogene
retro_tsyr_183,
Tursiops truncatus ENSTTRG00000014364 ortholog_one2many 1 retrogene
retro_ttru_265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_327 58.55 84.68
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Download FASTA sequences of all ENSPTRG00000018757 retrocopies