Parental gene: | Hmgn1, ENSRNOG00000048226 |
| Aliases: | None |
| Description: | high-mobility group nucleosome binding domain 1 [Source:RefSeq peptide;Acc:NP_001013202] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 11:42691941..42697860(+) |
>ENSRNOG00000048226
ATGCCCAAGAGGAAGGTTAGCGCAGATGGAGCGGCGAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGTCGGCCAAGCC
CGCCCCTGCCAAGGTGGACGCGAAACCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGACAAAAAAGCACAGATAAAAG
GGAAGAGGGGAGCGAAGGGCAAACAGGCTGAAGTGGCTGACCAGCAAACTACAGATCTGCCTGCAGAAAATGGAGAGACG
GAAAACCAGAGTCCAGCCTCTGAGGAAGAGAAAGAAGCGAAGTCTGATTAA
ATGCCCAAGAGGAAGGTTAGCGCAGATGGAGCGGCGAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGTCGGCCAAGCC
CGCCCCTGCCAAGGTGGACGCGAAACCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGACAAAAAAGCACAGATAAAAG
GGAAGAGGGGAGCGAAGGGCAAACAGGCTGAAGTGGCTGACCAGCAAACTACAGATCTGCCTGCAGAAAATGGAGAGACG
GAAAACCAGAGTCCAGCCTCTGAGGAAGAGAAAGAAGCGAAGTCTGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .07 RPM |
| SRP017611_kidney | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000002336 | possible_ortholog | 7 retrogenes | |
| Monodelphis domestica | ENSMODG00000020972 | ortholog_many2many | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000008550 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000040681 | ortholog_one2many | 13 retrogenes | |
| Rattus norvegicus | ENSRNOG00000050978 | within_species_paralog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_642 | 75.51 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_764 | 76.67 | 89.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_966 | 77.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_1020 | 84.85 | 68.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_rnor_1239 | 60.24 | 85.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_rnor_1290 | 59.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_rnor_2643 | 65.48 | 85.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_rnor_2667 | 68.04 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000048226 retrocopies