RetrogeneDB ID: | retro_mputfur_371 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896905.1:7809840..7810052(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSMPUG00000008550 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 51.39 % |
Parental protein coverage: | 52.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AKVEAKPKKAAAKDKSSDK-KVQTKGKRGAKGKQAEVANQEAKDDLPAENGETKN-ESPASDEAGEKEAK |
A.V....K...A..K............RG.KG.QAEVANQ..K.D.PAE..E..N.ES.ASDEAGEKE.K | |
Retrocopy | APVKVETKPNKATGKDKSS<RQKSTNQRGVKGNQAEVANQKTK*DSPAEIRENENEESLASDEAGEKETK |
Parental | SD |
SD | |
Retrocopy | SD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000002336 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000020972 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000008550 | 3 retrocopies |
retro_mputfur_252, retro_mputfur_371 , retro_mputfur_483,
|
Rattus norvegicus | ENSRNOG00000048226 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000050978 | 5 retrocopies |