Parental gene: | NDRG3, ENSSSCG00000007322 |
| Aliases: | None |
| Description: | NDRG family member 3 [Source:HGNC Symbol;Acc:14462] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 17:45359906..45427357(-) |
>ENSSSCG00000007322
ATGGATGAACTTCAGGATGTTCAACTCACAGAGATCAAACCACTTCTAAATGATAAGAATGGTACACGAAACTTCCAGGA
CTTTGACTGTCAGGAACATGATATAGAAACAACTCATGGTGTGGTCCACGTCACTATAAGAGGCCTACCGAAGGGAAACA
GACCGGTTATTATGACATACCATGACATTGGCCTCAATCATAAATCCTGTTTCAATGCGTTCTTTAACTTTGAGGATATG
CAAGAAATCACCCAGCACTTTGCTGTCTGTCATGTGGATGCCCCAGGCCAGCAGGAAGGTGCACCCTCTTTCCCATCTGG
GTACCAGTACCCCACAATGGATGAGCTGGCCGAAATGCTGCCTTCTGTTCTCACCCACTTAAATCTGAAAAGCATCATTG
GGGTTGGAGTTGGAGCTGGAGCTTACATCCTCAGCAGATTTGCTCTCAATCACCCAGAGCTTGTGGAAGGTCTCGTGCTC
ATTAACGTCGACCCTTGTGCTAAAGGCTGGATTGACTGGGCAGCTTCCAAACTCTCAGGACTGACAACCAATGTTGTGGA
CATTATTTTGGCTCATCACTTTGGGCAGGAAGAGTTGCAAGCCAACCTGGACCTGATTCAAACCTACAGACTACATATTG
CCCAAGATATCAACCAAGAAAACCTACAGCTCTTCCTGAGTTCTTATAACGGACGCAAAGACCTGGAGATTGAAAGACCC
ATCCTGGGACAAAATGATAACAAATCAAAGACATTAAAGTGTTCTACTTTATTGGTGGTAGGTGACAATTCACCTGCAGT
TGAGGCTGTGGTA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 4 .38 RPM |
| SRP014902_testis | 10 .61 RPM |
| SRP018288_heart | 5 .24 RPM |
| SRP018288_kidney | 17 .93 RPM |
| SRP018288_liver | 2 .40 RPM |
| SRP018288_lung | 10 .49 RPM |
| SRP018856_adipose | 7 .74 RPM |
| SRP035408_brain | 33 .92 RPM |
| SRP035408_liver | 2 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012562 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002250 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000009735 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000000895 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000022531 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_144 | 79.04 | 100.00 | Please wait, loading  |
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| 2. | retro_sscr_519 | 87.80 | 88.93 | Please wait, loading |
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| 3. | retro_sscr_539 | 87.80 | 88.93 | Please wait, loading |
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| 4. | retro_sscr_937 | 83.97 | 95.57 | Please wait, loading |
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| 5. | retro_sscr_1116 | 86.93 | 55.35 | Please wait, loading |
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Download FASTA sequences of all ENSSSCG00000007322 retrocopies