Parental gene:

SDAD1, ENSSSCG00000008974

Aliases:None
Description:SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537]
Organism:Pig (Sus scrofa)
Coordinates:8:75750053..75782963(-)


>ENSSSCG00000008974
ATGTCTAGCAGAAACAATAATAAGCTGCCCAGCAACCTGCCGCAGTTACAGAATCTTATCAAGCGGGACCCGCCGGCCTA
CATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATTACAACCAAATAAACCCAGCA
AGGAACTGGCAGAGCTGGTGATGTTTATGGCACAGATTGGTCACTGTTATCCAGAACATTTAAGTAACTTTCCTCAAGAA
CTGAAGGATCTTCTCTCCTACAACCACACTGTCCTGGATCCAGATCTCCGAATGACATTTTGCAAAGCTTTGATCTTGCT
GAGGAATAAGAATCTCATCAATCCATCAAGTTTGCTAGAACTCTTCTTTGAACTTCTACGTTGCCACGATAAGCTCCTGC
GCAAGACTTTGTATACTCACATTGTGACTGATATCAAAAATATAAATGCAAAACACAAGAACAATAAAGTGAATATAGTT
TTACAGAATTTCATGTATACCATGTTAAGAGACAGCAATGCAACTGCAGCCAAGATATCTTTAGATGTGATGATTGAACT
CTACAGAAGAAATATCTGGAATGATGCCAAAACTGTCAATGTGATCACAACAGCATGTTTCTCTAAGGTCACCAAGATAT
TAGTTGCTGCTTTGACATTCTTCCTTGGGAAAGACGAAGAGGAGAAACAGGGCAGTGACTCAGAATCTGAGGATGACACA
CCAACAGCAAGAGACCTGCTGGTGCAGTATGCCACAGGGAAGAAAAGCTCCAAAAACAAGAAGAAGTTAGAAAAGGCTAT
GAAAGTGCTCAAGAAACAAAAGAAGAAGAAAAAACCAGAAGTGTTCAACTTTTCAGCGATTCATTTGATTCATGATCCCC
AAGATTTTGCAGAAAAGCTACTGAAGCAGCTAGAGAGTTCTAAGGAGAGGTTTGAGGTGAAGATGATGCTCATGAACCTC
ATCTCCAGATTGGTGGGAATTCACGAGCTTTTTCTCTTCAACTTCTATCCCTTTGTGCAGAGATTTCTGCAGCCCCACCA
AAGAGAAGTAACAAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACTTAGTACCTCCAGAGATCATCCAGTCTTTGC
TCATGACGGTGGCCAACAACTTTGTTACCGACAAGAACTCTGGGGAAGTCATGACCGTAGGAATCAATGCTATAAAAGAG
ATAACAGCTCGATGTCCTCTAGCTATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTATAAAACACACAAAGATAAGAA
TGTGATGATGTCTGCTAGAACTTTGATTCAGCTCTTCCGAACACTGAATCCTCAGATGTTGCAAAAGAAATTCCGGGGTA
AGCCTACAGAGGCGTCCTTAGAAGCAAGAGTGCAAGAATATGGAGAACTAGATGCTAAAGATTACATTCCAGGAGCAGAA
ATCCTGGAAGTTGAAAAAGAAGAAAATGCTGAAGAGGATGGAGACGGGTGGGAGAGTACCAGCCTCAGTGACGAAGCAGA
CTCCGATGGTGAGTGGGTTGACGTGCACCATTCTTCCGATGAAGAGCAGAAAGAAATTTCCGAGAAGCTGAACAGCATGC
CTTTGGAGGAGCGGAAAGCCAAAGCTGCAGCCGTCAGCACCAGCCGGGTCTTAAGTCAGGAAGACTTCCAGAAAATCCGA
ATGGCCCAAATGAGGAAAGAACTCGACGCGGCCCCCGGGAAAGCCCAGAAGAGGAAGTACGTGGAAATAGACAGTGATGA
GGAGCCCAGGGGTGAGTTACTTTCGCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAAGTCTGACAAGGAGACAAGAC
TAGCAACTGCAATGGCCGGAAAGACAGACCGGAAAGAATTTGTGAGGAAGAAGACCAAGATGAATCCATTTTCCAGTTCC
ACAAATAAAGAGAAGAAAAAGCAGAAGAACTTTATGATGATGCGGTATAGTCATAACGTCCGGTCCAAAAATAAGCGTTC
CTTCCGAGAAAAGCAGCTGGCACTACGAGATGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .57 RPM
SRP014902_testis 26 .31 RPM
SRP018288_heart 37 .30 RPM
SRP018288_kidney 41 .37 RPM
SRP018288_liver 32 .46 RPM
SRP018288_lung 33 .09 RPM
SRP018856_adipose 18 .86 RPM
SRP035408_brain 43 .58 RPM
SRP035408_liver 45 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008521 ortholog_one2one 2 retrogenes
retro_cfam_1211, retro_cfam_515,
Echinops telfairi ENSETEG00000004811 ortholog_one2one 2 retrogenes
retro_etel_1946, retro_etel_779,
Gorilla gorilla ENSGGOG00000006441 possible_ortholog 1 retrogene
retro_ggor_1498,
Loxodonta africana ENSLAFG00000012217 ortholog_one2many 1 retrogene
retro_lafr_980,
Microcebus murinus ENSMICG00000006682 ortholog_one2one 1 retrogene
retro_mmur_1204,
Macaca mulatta ENSMMUG00000017503 possible_ortholog 1 retrogene
retro_mmul_604,
Nomascus leucogenys ENSNLEG00000027034 possible_ortholog 1 retrogene
retro_nleu_2410,
Rattus norvegicus ENSRNOG00000022229 ortholog_one2one 2 retrogenes
retro_rnor_1381, retro_rnor_1967,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_571 83.72 74.67
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Download FASTA sequences of all ENSSSCG00000008974 retrocopies