Parental gene:

ENSSSCG00000010328

Aliases:LOC100155012, RPS24
Description:40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:F1S2E5]
Organism:Pig (Sus scrofa)
Coordinates:14:87005401..87011466(+)


>ENSSSCG00000010328
ATGAACGACACAGTCACTATCCGGACCAGGAAGTTCATGACCAACCGACTACTTCAGCGGAAACAAATGGTCATTGATGT
CCTTCACCCTGGGAAGGCAACGGTACCTAAGACAGAAATTCGGGAAAAACTAGCCAAAATGTACAAGACTACACCAGATG
TCATCTTTGTCTTTGGATTCAGAACCCATTTTGGTGGTGGCAAGACAACCGGCTTTGGCATGATTTATGATTCCTTGGAT
TATGCAAAGAAAAATGAGCCCAAACACAGGCTTGCAAGACACGGCTTGTATGAGAAGAAAAAGACCTCAAGAAAACAGAG
AAAAGAACGCAAGAACAGAATGAAGAAAGTTAGGGGAACTGCAAAGGCCAATGTTGGTGCTGGCAAAAAGAAAATAACAT
TCTTGTTCAGGTGTTGGAATTTTGCCTTTTGGATGCAGCTAAGTTCTGCCTCTTTCAGTACTAATTCATGCTACTTTTGT
CTTCTACTGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 307 .01 RPM
SRP014902_testis 543 .58 RPM
SRP018288_heart 921 .88 RPM
SRP018288_kidney 281 .92 RPM
SRP018288_liver 248 .50 RPM
SRP018288_lung 655 .56 RPM
SRP018856_adipose 472 .27 RPM
SRP035408_brain 1032 .12 RPM
SRP035408_liver 794 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000010243 ortholog_one2one 18 retrogenes
retro_dnov_1299, retro_dnov_1305, retro_dnov_1394, retro_dnov_1444, retro_dnov_1470, retro_dnov_1471, retro_dnov_168, retro_dnov_1889, retro_dnov_1920, retro_dnov_1985, retro_dnov_2074, retro_dnov_2357, retro_dnov_288, retro_dnov_309, retro_dnov_551, retro_dnov_73, retro_dnov_782, retro_dnov_92,
Dipodomys ordii ENSDORG00000000189 possible_ortholog 4 retrogenes
retro_dord_248, retro_dord_498, retro_dord_717, retro_dord_766,
Equus caballus ENSECAG00000016939 possible_ortholog 5 retrogenes
retro_ecab_239, retro_ecab_398, retro_ecab_422, retro_ecab_514, retro_ecab_746,
Echinops telfairi ENSETEG00000007481 ortholog_one2one 32 retrogenes
retro_etel_1119, retro_etel_1242, retro_etel_1274, retro_etel_1339, retro_etel_1395, retro_etel_1663, retro_etel_1688, retro_etel_1783, retro_etel_1800, retro_etel_1806, retro_etel_183, retro_etel_1901, retro_etel_1934, retro_etel_1978, retro_etel_1991, retro_etel_2040, retro_etel_2104, retro_etel_223, retro_etel_287, retro_etel_289, retro_etel_369, retro_etel_422, retro_etel_476, retro_etel_503, retro_etel_523, retro_etel_67, retro_etel_744, retro_etel_752, retro_etel_815, retro_etel_904, retro_etel_91, retro_etel_94,
Gadus morhua ENSGMOG00000012595 ortholog_many2many 1 retrogene
retro_gmor_15,
Microcebus murinus ENSMICG00000005951 possible_ortholog 7 retrogenes
retro_mmur_1308, retro_mmur_132, retro_mmur_1338, retro_mmur_1636, retro_mmur_217, retro_mmur_583, retro_mmur_902,
Monodelphis domestica ENSMODG00000025091 ortholog_one2many 3 retrogenes
retro_mdom_1303, retro_mdom_1706, retro_mdom_1914,
Mus musculus ENSMUSG00000025290 possible_ortholog 13 retrogenes
retro_mmus_1101, retro_mmus_1462, retro_mmus_1589, retro_mmus_1592, retro_mmus_1599, retro_mmus_2134, retro_mmus_2332, retro_mmus_2497, retro_mmus_2984, retro_mmus_3162, retro_mmus_321, retro_mmus_3233, retro_mmus_602,
Ornithorhynchus anatinus ENSOANG00000006329 ortholog_one2many 1 retrogene
retro_oana_54,
Pongo abelii ENSPPYG00000002304 possible_ortholog 1 retrogene
retro_pabe_184,
Sarcophilus harrisii ENSSHAG00000008090 ortholog_one2many 3 retrogenes
retro_shar_276, retro_shar_303, retro_shar_697,
Tarsius syrichta ENSTSYG00000006715 possible_ortholog 1 retrogene
retro_tsyr_1919,
Tursiops truncatus ENSTTRG00000007845 possible_ortholog 3 retrogenes
retro_ttru_1462, retro_ttru_740, retro_ttru_86,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_14 89.31 80.37
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2. retro_sscr_242 84.09 80.37
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3. retro_sscr_289 81.06 99.24
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4. retro_sscr_491 73.64 65.64
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5. retro_sscr_564 79.70 80.37
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6. retro_sscr_718 84.09 99.24
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7. retro_sscr_902 86.61 68.71
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8. retro_sscr_1212 75.97 78.53
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Download FASTA sequences of all ENSSSCG00000010328 retrocopies