Parental gene:

ENSSSCG00000014125

Aliases:None
Description:Sus scrofa dihydrofolate reductase (DHFR), mRNA. [Source:RefSeq mRNA;Acc:NM_001244064]
Organism:Pig (Sus scrofa)
Coordinates:2:91077847..91102076(-)


>ENSSSCG00000014125
ATGGTTCGTCCGCTAAACTGCATCGTTGCTGTGTCCCAGAACATGGGCATTGGCAAGAACGGGGACCTGCCCTGGCCCCC
GCTCAGGAACGAATACAAATATCAAAGAATGACCACAACCTCTTCAGTAGAAGGCAAACAGAATTTGGTGATTATGGGTA
GGAAGACCTGGTTCTCCATTCCGGAGAAGAATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAG
GAACCTCCACAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTACTGAGCAGCCAGAATTAAAAAA
TAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCAGTTTATAAGGAAGCCATGAACAAGCCAGGCCATATTAGACTTT
TTGTGACAAGGATCATGAAAGAATTTGAAAGTGACACATTTTTCCCAGAAATTGACTTGGAAAAATATAAACTTCTCTCA
GAATGTTCAGGAGTTCCTTCTGATGTCCAGGAAGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTA
A

Library Parental gene expression (RPM)
SRP014902_placenta 1 .86 RPM
SRP014902_testis 7 .50 RPM
SRP018288_heart 7 .02 RPM
SRP018288_kidney 21 .08 RPM
SRP018288_liver 31 .82 RPM
SRP018288_lung 14 .66 RPM
SRP018856_adipose 4 .45 RPM
SRP035408_brain 6 .29 RPM
SRP035408_liver 20 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015750 ortholog_one2one 2 retrogenes
retro_amel_218, retro_amel_842,
Bos taurus ENSBTAG00000007681 ortholog_one2one 1 retrogene
retro_btau_351,
Callithrix jacchus ENSCJAG00000019556 ortholog_one2many 4 retrogenes
retro_cjac_2017, retro_cjac_2298, retro_cjac_2446, retro_cjac_531,
Equus caballus ENSECAG00000026827 ortholog_one2one 1 retrogene
retro_ecab_513,
Felis catus ENSFCAG00000026745 ortholog_one2one 3 retrogenes
retro_fcat_579, retro_fcat_705, retro_fcat_841,
Homo sapiens ENSG00000228716 ortholog_one2many 4 retrogenes
retro_hsap_1927, retro_hsap_2119, retro_hsap_3602, retro_hsap_6,
Gorilla gorilla ENSGGOG00000022366 ortholog_one2one 2 retrogenes
retro_ggor_1959, retro_ggor_2429,
Myotis lucifugus ENSMLUG00000012200 ortholog_one2one 2 retrogenes
retro_mluc_1109, retro_mluc_2577,
Macaca mulatta ENSMMUG00000018283 ortholog_one2many 13 retrogenes
retro_mmul_1496, retro_mmul_425, retro_mmul_692, retro_mmul_693, retro_mmul_695, retro_mmul_700, retro_mmul_701, retro_mmul_704, retro_mmul_738, retro_mmul_760, retro_mmul_768, retro_mmul_82, retro_mmul_994,
Monodelphis domestica ENSMODG00000024860 ortholog_one2one 3 retrogenes
retro_mdom_1685, retro_mdom_604, retro_mdom_703,
Mustela putorius furo ENSMPUG00000008704 ortholog_one2one 1 retrogene
retro_mputfur_1107,
Mus musculus ENSMUSG00000021707 ortholog_one2one 1 retrogene
retro_mmus_3326,
Nomascus leucogenys ENSNLEG00000012989 ortholog_one2one 3 retrogenes
retro_nleu_1193, retro_nleu_2314, retro_nleu_2631,
Oryctolagus cuniculus ENSOCUG00000005127 ortholog_one2one 3 retrogenes
retro_ocun_1351, retro_ocun_1640, retro_ocun_650,
Otolemur garnettii ENSOGAG00000025320 ortholog_one2many 1 retrogene
retro_ogar_222,
Pongo abelii ENSPPYG00000015600 ortholog_one2many 2 retrogenes
retro_pabe_2959, retro_pabe_41,
Pan troglodytes ENSPTRG00000017042 ortholog_one2many 3 retrogenes
retro_ptro_109, retro_ptro_1551, retro_ptro_2988,
Rattus norvegicus ENSRNOG00000013521 ortholog_one2one 1 retrogene
retro_rnor_2030,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_104 90.13 80.65
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2. retro_sscr_1131 89.93 79.03
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Download FASTA sequences of all ENSSSCG00000014125 retrocopies