RetrogeneDB ID: | retro_mmul_1496 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:14519852..14520379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DHFR | ||
Ensembl ID: | ENSMMUG00000018283 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.31 % |
Parental protein coverage: | 66.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NFAPILTARSVLTSGLGGA-PAAVMVSSLNCIVAVSQNMGIGKNGDLPWPP-LRNEFRYFQRMTTTSSVE |
NFA..L.......S.LGGA..AAVMV..LNCIVAVSQNMGIGKNG.LPWP...RNEFRYFQR.TT.SSVE | |
Retrocopy | NFAAVLAWLAGVASKLGGA>TAAVMVRLLNCIVAVSQNMGIGKNGELPWPL>IRNEFRYFQRTTTPSSVE |
Parental | GKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLARSLDDALKLTEQPELANKVDMIWI |
GKQNLVIMG.KTWFSIPEKNRPLK.RINLVLSRELKEPPQGAHFLARSLDDALKLTEQPELANKVDMIWI | |
Retrocopy | GKQNLVIMGRKTWFSIPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTEQPELANKVDMIWI |
Parental | VGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFLPEI |
VGGSSVYKEAMNHPGHLKLFVTRIMQDFESD....EI | |
Retrocopy | VGGSSVYKEAMNHPGHLKLFVTRIMQDFESDXXXXEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .56 RPM | 0 .67 RPM |
SRP007412_brain_prefrontal_cortex | 0 .87 RPM | 1 .19 RPM |
SRP007412_cerebellum | 0 .97 RPM | 0 .13 RPM |
SRP007412_heart | 0 .82 RPM | 0 .35 RPM |
SRP007412_kidney | 1 .76 RPM | 0 .82 RPM |
SRP007412_liver | 0 .67 RPM | 3 .21 RPM |
SRP007412_testis | 0 .57 RPM | 0 .15 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_6 |
Pan troglodytes | retro_ptro_109 |
Gorilla gorilla | retro_ggor_1959 |
Callithrix jacchus | retro_cjac_2017 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015750 | 2 retrocopies | |
Bos taurus | ENSBTAG00000007681 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019556 | 4 retrocopies | |
Equus caballus | ENSECAG00000026827 | 1 retrocopy | |
Felis catus | ENSFCAG00000026745 | 3 retrocopies | |
Homo sapiens | ENSG00000228716 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000022366 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012200 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018283 | 13 retrocopies | |
Monodelphis domestica | ENSMODG00000024860 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008704 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021707 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012989 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005127 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000025320 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015600 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017042 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013521 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014125 | 2 retrocopies |