Parental gene:

SHFM1, ENSSSCG00000015337

Aliases:None
Description:split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845]
Organism:Pig (Sus scrofa)
Coordinates:9:83962672..83987408(-)


>ENSSSCG00000015337
ATGTCAGAGAAAAAACAGCCGGTAGACTTGGGTCTCCTGGAGGAGGACGACGAGTTCGAGGAGTTTCCTGCAGAAGACTG
GGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGACTTCTCCA
ATCAGTTACGAGCTGAATTAGAGAAACATGGTTATAAGATGGAGACCTCATAG

Library Parental gene expression (RPM)
SRP014902_placenta 15 .40 RPM
SRP014902_testis 44 .41 RPM
SRP018856_adipose 100 .26 RPM
SRP018288_kidney 43 .44 RPM
SRP018288_lung 65 .27 RPM
SRP018288_liver 46 .53 RPM
SRP018288_heart 94 .30 RPM
SRP035408_liver 111 .41 RPM
SRP035408_brain 69 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010434 possible_ortholog 1 retrogene
retro_amel_1234,
Equus caballus ENSECAG00000018179 possible_ortholog 1 retrogene
retro_ecab_360,
Erinaceus europaeus ENSEEUG00000002237 possible_ortholog 2 retrogenes
retro_eeur_290, retro_eeur_586,
Felis catus ENSFCAG00000023254 possible_ortholog 2 retrogenes
retro_fcat_1138, retro_fcat_121,
Myotis lucifugus ENSMLUG00000014208 ortholog_one2many 1 retrogene
retro_mluc_948,
Oryctolagus cuniculus ENSOCUG00000026246 ortholog_one2one 3 retrogenes
retro_ocun_1324, retro_ocun_452, retro_ocun_77,
Ictidomys tridecemlineatus ENSSTOG00000011501 possible_ortholog 1 retrogene
retro_itri_253,
Tupaia belangeri ENSTBEG00000016474 possible_ortholog 3 retrogenes
retro_tbel_2837, retro_tbel_2998, retro_tbel_3844,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_67 98.57 100.00
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Download FASTA sequences of all ENSSSCG00000015337 retrocopies